RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1047551" and tax_kingdom = "Nanobdellati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Nanobdellati · 1 ✖

bioproject 1

  • PRJNA1047551 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29466478 29466478 PRJNA1047551_S_NODE_4950_length_217_cov_2.373626_g4823_i0 PRJNA1047551 4950 217 2.373626 5.15076842 Candidatus Altarchaeum sp. 2817952 Archaea Archaea 65.9 1.89e-10   NR MDI6730454.1 2817952 g4823 i0 50.7 4.78341013824885 71 29 89.9 2 16 210 554 624 MDI6730454.1 anthranilate synthase family protein [Candidatus Altarchaeum sp.] diamond 1038 65.9 1 Archaea   Nanobdellati Candidatus Altarchaeota Candidatus Altiarchaeia Candidatus Altarchaeales Candidatus Altarchaeaceae Candidatus Altarchaeum Candidatus Altarchaeum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;