RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1047551" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1047551 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28543341 28543341 PRJNA1047551_S_NODE_9347_length_172_cov_1.613139_g9220_i0 PRJNA1047551 9347 172 1.613139 2.77459908 Bacteria 2 Bacteria Bacteria 104 4.84e-25   NR MBI1830504.1 2026780 g9220 i0 89.5 2.98255813953488 57 6 99.4 0 1 171 220 276 MBI1830504.1 terpene cyclase/mutase family protein [Planctomycetota bacterium] diamond 513 104 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29372170 29372170 PRJNA1047551_S_NODE_489_length_601_cov_3.906360_g379_i0 PRJNA1047551 489 601 3.90636 23.4772236 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 48.1 0.0123   NR MBR2982140.1 2212473 g379 i0 28.6 0.489184692179701 98 59 45.4 4 190 462 37 130 MBR2982140.1 FtsW/RodA/SpoVE family cell cycle protein [Kiritimatiellia bacterium] diamond 294 48.1 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
30951736 30951736 PRJNA1047551_S_NODE_13094_length_152_cov_2.162393_g12967_i0 PRJNA1047551 13094 152 2.162393 3.28683736 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.0276   NR MBL8752950.1 2026780 g12967 i0 48.5 0.651315789473684 33 17 65.1 0 150 52 7 39 MBL8752950.1 hypothetical protein [Planctomycetota bacterium] diamond 99 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;