RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1047551" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1047551 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23962305 23962305 PRJNA1047551_S_NODE_5279_length_212_cov_2.305085_g5152_i0 PRJNA1047551 5279 212 2.305085 4.8867802 Bacteria 2 Bacteria Bacteria 76.3 3.84e-14   NR KKT01085.1 1619085 g5152 i0 64.1 8.33490566037736 64 23 90.6 0 211 20 386 449 KKT01085.1 MAG: Chaperone ClpB [candidate division TM6 bacterium GW2011_GWF2_43_17] diamond 1767 76.3 1 Bacteria Bacteria candidate phyla             candidate division TM6 bacterium GW2011_GWF2_43_17
27256494 27256494 PRJNA1047551_S_NODE_3043_length_265_cov_2.691304_g2916_i0 PRJNA1047551 3043 265 2.691304 7.1319556 Candidatus Binatales bacterium 3107056 Bacteria Bacteria 43.9 0.0132   NR MFI5352374.1 3107056 g2916 i0 81.8 1.26792452830189 22 4 24.9 0 5 70 171 192 MFI5352374.1 superoxide dismutase [Candidatus Binatales bacterium] diamond 336 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia Candidatus Binatales     Candidatus Binatales bacterium
27762105 27762105 PRJNA1047551_S_NODE_4284_length_229_cov_2.252577_g4157_i0 PRJNA1047551 4284 229 2.252577 5.15840133 Candidatus Magasanikbacteria bacterium RIFOXYC2_FULL_42_28 1798704 Bacteria Bacteria 90.9 2.96e-19   NR OGH88075.1 1798704 g4157 i0 76.4 1.45414847161572 55 13 72.1 0 4 168 422 476 OGH88075.1 MAG: adenosylhomocysteinase [Candidatus Magasanikbacteria bacterium RIFOXYC2_FULL_42_28] diamond 333 90.9 1 Bacteria Bacteria candidate phyla   Candidatus Magasanikiibacteriota         Candidatus Magasanikbacteria bacterium RIFOXYC2_FULL_42_28

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;