RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1047321" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047321 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27288097 27288097 PRJNA1047321_P_NODE_5963_length_261_cov_1.079787_g5792_i0 PRJNA1047321 5963 261 1.079787 2.81824407 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 43.1 0.0332   NR MEW6501394.1 2202153 g5792 i0 41.7 0.551724137931034 48 28 55.2 0 206 63 341 388 MEW6501394.1 ABC transporter permease subunit [Thermodesulfobacteriota bacterium] diamond 144 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29592726 29592726 PRJNA1047321_P_NODE_7590_length_246_cov_0.890173_g7419_i0 PRJNA1047321 7590 246 0.890173 2.18982558 Citrifermentans bremense 60035 Bacteria Bacteria 88.6 2.31e-18   NR WP_026840625.1 60035 g7419 i0 86 1.82926829268293 50 7 61 0 152 3 1 50 WP_026840625.1 diguanylate cyclase [Citrifermentans bremense] diamond 450 88.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Citrifermentans Citrifermentans bremense
31646948 31646948 PRJNA1047321_P_NODE_6477_length_251_cov_0.865169_g6306_i0 PRJNA1047321 6477 251 0.865169 2.17157419 Geobacteraceae bacterium 2282154 Bacteria Bacteria 157 1.6999999999999998e-44   NR HTP66956.1 2282154 g6306 i0 81.9 0.99203187250996006 83 15 99.2 0 3 251 11 93 HTP66956.1 ISL3 family transposase [Geobacteraceae bacterium] diamond 249 157 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae   Geobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;