RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1047321" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047321 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28614359 28614359 PRJNA1047321_P_NODE_8167_length_243_cov_0.905882_g7996_i0 PRJNA1047321 8167 243 0.905882 2.20129326 Physeter macrocephalus 9755 Chordata Chordata 42.4 0.0488   NR XP_054936518.1 9755 g7996 i0 51.2 1.06172839506173 43 19 53.1 1 17 145 7 47 XP_054936518.1 transcobalamin-2 isoform X3 [Physeter macrocephalus] diamond 258 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
29056507 29056507 PRJNA1047321_P_NODE_7828_length_245_cov_0.895349_g7657_i0 PRJNA1047321 7828 245 0.895349 2.19360505 Polypterus senegalus 55291 Chordata Chordata 107 1.45e-25   NR KAG2455236.1 55291 g7657 i0 58 6.94285714285714 81 34 99.2 0 3 245 207 287 KAG2455236.1 TCB1 transposase, partial [Polypterus senegalus] diamond 1701 107 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32248548 32248548 PRJNA1047321_P_NODE_8398_length_242_cov_0.911243_g8227_i0 PRJNA1047321 8398 242 0.911243 2.20520806 Ambystoma mexicanum 8296 Chordata Chordata 56.2 6.24e-7   NR XP_069494769.1 8296 g8227 i0 48.6 3.84297520661157 72 27 76.9 1 240 55 239 310 XP_069494769.1 protein farnesyltransferase subunit beta [Ambystoma mexicanum] diamond 930 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;