RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1047321" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047321 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12928168 12928168 PRJNA1047321_P_NODE_8211_length_243_cov_0.905882_g8040_i0 PRJNA1047321 8211 243 0.905882 2.20129326 Acidobacteriota 57723 Bacteria Bacteria 137 3.51e-36   NR MBA3334589.1 1978231 g8040 i0 78.8 8.88888888888889 80 17 98.8 0 3 242 112 191 MBA3334589.1 type I glutamate--ammonia ligase [Acidobacteriota bacterium] diamond 2160 138 0.992753623188406 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27129666 27129666 PRJNA1047321_P_NODE_7582_length_246_cov_0.890173_g7411_i0 PRJNA1047321 7582 246 0.890173 2.18982558 Blastocatellia bacterium 2052146 Bacteria Bacteria 62.4 1.56e-9   NR HZN11927.1 2052146 g7411 i0 37.3 0.914634146341463 75 47 91.5 0 17 241 1 75 HZN11927.1 PRC-barrel domain-containing protein [Blastocatellia bacterium] diamond 225 62.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
28069502 28069502 PRJNA1047321_P_NODE_7285_length_247_cov_0.885057_g7114_i0 PRJNA1047321 7285 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 126 1.15e-31   NR MYN66478.1 1978231 g7114 i0 73.2 2.98785425101215 82 22 99.6 0 247 2 439 520 MYN66478.1 DUF87 domain-containing protein [Acidobacteriota bacterium] diamond 738 126 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28140986 28140986 PRJNA1047321_P_NODE_6425_length_251_cov_1.634831_g6254_i0 PRJNA1047321 6425 251 1.634831 4.10342581 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 89.7 4.53e-19   NR HVJ28611.1 2910147 g6254 i0 63.6 1.73306772908367 66 24 78.9 0 53 250 18 83 HVJ28611.1 AraC family transcriptional regulator [Vicinamibacterales bacterium] diamond 435 89.7 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
29814048 29814048 PRJNA1047321_P_NODE_8411_length_242_cov_0.911243_g8240_i0 PRJNA1047321 8411 242 0.911243 2.20520806 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 50.4 7.12e-5   NR HEX9930534.1 2283092 g8240 i0 34.9 1.06611570247934 86 49 97.9 1 2 238 539 624 HEX9930534.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 258 50.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30477727 30477727 PRJNA1047321_P_NODE_5353_length_275_cov_1.193069_g5182_i0 PRJNA1047321 5353 275 1.193069 3.28093975 Acidobacteriota bacterium 1978231 Bacteria Bacteria 94 1.79e-20   NR MCA1606582.1 1978231 g5182 i0 54.5 0.96 88 40 96 0 272 9 154 241 MCA1606582.1 hypothetical protein [Acidobacteriota bacterium] diamond 264 94 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31046605 31046605 PRJNA1047321_P_NODE_7635_length_246_cov_0.890173_g7464_i0 PRJNA1047321 7635 246 0.890173 2.18982558 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 69.3 1.65e-11   NR HSB17870.1 2212468 g7464 i0 50 1.79268292682927 74 33 89 2 3 221 559 629 HSB17870.1 ABC transporter permease [Bryobacteraceae bacterium] diamond 441 69.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31457462 31457462 PRJNA1047321_P_NODE_8536_length_242_cov_0.911243_g8365_i0 PRJNA1047321 8536 242 0.911243 2.20520806 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 159 8.25e-46   NR GIU74549.1 2212468 g8365 i0 100 0.991735537190083 80 0 99.2 0 240 1 111 190 GIU74549.1 MAG: L-asparaginase [Bryobacteraceae bacterium] diamond 240 159 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32533216 32533216 PRJNA1047321_P_NODE_8759_length_241_cov_0.916667_g8588_i0 PRJNA1047321 8759 241 0.916667 2.20916747 Holophagaceae bacterium 2052165 Bacteria Bacteria 83.6 1.57e-16   NR HZU52761.1 2052165 g8588 i0 73.1 0.647302904564315 52 14 64.7 0 157 2 1071 1122 HZU52761.1 DUF3857 domain-containing protein [Holophagaceae bacterium] diamond 156 83.6 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae   Holophagaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;