RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1046144" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1046144 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28701133 28701133 PRJNA1046144_P_NODE_48887_length_250_cov_1.585635_g48592_i0 PRJNA1046144 48887 250 1.585635 3.9640875 Metazoa 33208 Mollusca Mollusca 54.7 2.4e-6   NR XP_048253896.1 6454 g48592 i0 42.9 4.908 63 34 73.2 1 250 68 287 349 XP_048253896.1 histone-lysine N-methyltransferase SETMAR-like [Haliotis rufescens] diamond 1227 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
29111597 29111597 PRJNA1046144_P_NODE_56988_length_234_cov_3.175758_g56693_i0 PRJNA1046144 56988 234 3.175758 7.43127372 Metazoa 33208 Mollusca Mollusca 141 1.7e-37   NR XP_022293018.1 6565 g56693 i0 83.1 8.87179487179487 77 13 98.7 0 233 3 228 304 XP_022293018.1 importin subunit alpha-7-like isoform X2 [Crassostrea virginica] diamond 2076 142 0.992957746478873 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica
30090236 30090236 PRJNA1046144_P_NODE_58052_length_234_cov_0.872727_g57757_i0 PRJNA1046144 58052 234 0.872727 2.04218118 Metazoa 33208 Mollusca Mollusca 42.4 0.0456   NR XP_045183462.2 6596 g57757 i0 31.1 1.46153846153846 61 41 76.9 1 19 198 155 215 XP_045183462.2 uncharacterized protein F54H12.2-like [Mercenaria mercenaria] diamond 342 42.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;