RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1046144" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1046144 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26718300 26718300 PRJNA1046144_P_NODE_61781_length_231_cov_0.888889_g61486_i0 PRJNA1046144 61781 231 0.888889 2.05333359 Trichosurus vulpecula 9337 Chordata Chordata 48.1 3.96e-4   NR XP_036613874.1 9337 g61486 i0 34.4 2.2987012987013 64 42 83.1 0 12 203 244 307 XP_036613874.1 zinc finger protein 345-like [Trichosurus vulpecula] diamond 531 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
30532692 30532692 PRJNA1046144_P_NODE_29133_length_310_cov_1.854772_g28838_i0 PRJNA1046144 29133 310 1.854772 5.7497932 Chordata 7711 Chordata Chordata 50.4 1.59e-4   NR XP_067952570.1 7769 g28838 i0 61.1 1.26774193548387 36 13 34.8 1 231 124 1 35 XP_067952570.1 zinc finger protein 420-like, partial [Myxine glutinosa] diamond 393 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
31140677 31140677 PRJNA1046144_P_NODE_43155_length_263_cov_2.432990_g42860_i0 PRJNA1046144 43155 263 2.43299 6.3987637 Cnephaeus nilssonii 3371016 Chordata Chordata 43.5 0.0207   NR KAK1346744.1 3371016 g42860 i0 44.6 0.844106463878327 74 39 84.4 2 222 1 75 146 KAK1346744.1 hypothetical protein QTO34_000604 [Cnephaeus nilssonii] diamond 222 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Cnephaeus Cnephaeus nilssonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;