RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1046144" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1046144 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26591793 26591793 PRJNA1046144_P_NODE_69501_length_226_cov_0.917197_g69206_i0 PRJNA1046144 69501 226 0.917197 2.07286522 Ganoderma sinense ZZ 36075 Fungi Fungi 42.4 0.0391   NR PIL28185.1 1077348 g69206 i0 50 0.584070796460177 44 20 55.8 1 224 99 122 165 PIL28185.1 hypothetical protein GSI_09722 [Ganoderma sinense ZZ0214-1] diamond 132 42.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Ganoderma Ganoderma sinense
30003769 30003769 PRJNA1046144_P_NODE_50591_length_246_cov_2.067797_g50296_i0 PRJNA1046144 50591 246 2.067797 5.08678062 Irpex lacteus 5319 Fungi Fungi 47 0.0012   NR KAI0815074.1 5319 g50296 i0 42.6 0.573170731707317 47 25 57.3 1 20 160 364 408 KAI0815074.1 hypothetical protein BC629DRAFT_1588752 [Irpex lacteus] diamond 141 47 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Irpicaceae Irpex Irpex lacteus
32627450 32627450 PRJNA1046144_P_NODE_62300_length_231_cov_0.888889_g62005_i0 PRJNA1046144 62300 231 0.888889 2.05333359 Peniophora sp. CBMAI 1 1756134 Fungi Fungi 87 8.17e-18   NR VDC00933.1 718367 g62005 i0 97.9 0.623376623376623 48 1 62.3 0 1 144 306 353 VDC00933.1 unnamed protein product [Peniophora sp. CBMAI 1063] diamond 144 87 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Russulales Peniophoraceae Peniophora Peniophora sp. CBMAI 1063

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;