RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1046144" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1046144 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26908681 26908681 PRJNA1046144_P_NODE_46642_length_255_cov_1.575269_g46347_i0 PRJNA1046144 46642 255 1.575269 4.01693595 Patescibacteria group bacterium 2052139 Bacteria Bacteria 51.6 2.4e-5   NR MEK7107252.1 2052139 g46347 i0 65.8 0.447058823529412 38 13 44.7 0 3 116 118 155 MEK7107252.1 hypothetical protein [Patescibacteria group bacterium] diamond 114 51.6 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31330727 31330727 PRJNA1046144_P_NODE_63336_length_230_cov_0.894410_g63041_i0 PRJNA1046144 63336 230 0.89441 2.057143 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 109 9.53e-26   NR MEO5949512.1 1917697 g63041 i0 65.7 0.91304347826087 70 24 91.3 0 19 228 415 484 MEO5949512.1 hypothetical protein [Candidatus Saccharimonas sp.] diamond 210 109 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;