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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA1044115" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1044115 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1446058 1446058 PRJNA1044115_P_NODE_24982_length_291_cov_1.908257_g24798_i0 PRJNA1044115 24982 291 1.908257 5.55302787 Lampetra planeri 7750 Chordata Chordata 195 5.899999999999999e-56   NR CAL5934375.1 7750 g24798 i0 96.9 107 97 3 100 0 1 291 470 566 CAL5934375.1 unnamed protein product [Lampetra planeri] diamond 31137 195 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
26686897 26686897 PRJNA1044115_P_NODE_28501_length_274_cov_2.676617_g28317_i0 PRJNA1044115 28501 274 2.676617 7.33393058 Polypterus senegalus 55291 Chordata Chordata 75.5 1.72e-13   NR KAG2469586.1 55291 g28317 i0 73.2 0.613138686131387 56 14 60.2 1 34 198 22 77 KAG2469586.1 A2ML1 protein, partial [Polypterus senegalus] diamond 168 75.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
27121675 27121675 PRJNA1044115_P_NODE_36802_length_249_cov_0.886364_g36618_i0 PRJNA1044115 36802 249 0.886364 2.20704636 Equus 9789 Chordata Chordata 45.8 0.00328   NR XP_023503942.2 9796 g36618 i0 51.5 1.57831325301205 33 16 39.8 0 8 106 198 230 XP_023503942.2 zinc finger protein 605 isoform X3 [Equus caballus] diamond 393 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
27785562 27785562 PRJNA1044115_P_NODE_12724_length_416_cov_4.469388_g12540_i0 PRJNA1044115 12724 416 4.469388 18.59265408 Metazoa 33208 Chordata Chordata 60.8 7.64e-8   NR KAJ1082927.1 8319 g12540 i0 62.8 2.09134615384615 43 15 31 1 406 278 91 132 KAJ1082927.1 hypothetical protein NDU88_003088, partial [Pleurodeles waltl] diamond 870 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
27856443 27856443 PRJNA1044115_P_NODE_39625_length_245_cov_0.906977_g39441_i0 PRJNA1044115 39625 245 0.906977 2.22209365 Mus musculus 10090 Chordata Chordata 94 3.54e-20   NR EDL12777.1 10090 g39441 i0 80.3 90.6244897959184 61 10 72.2 1 26 202 217 277 EDL12777.1 methyltransferase 10 domain containing, isoform CRA_a, partial [Mus musculus] diamond 22203 94.7 0.992608236536431 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28424988 28424988 PRJNA1044115_P_NODE_40326_length_244_cov_0.912281_g40142_i0 PRJNA1044115 40326 244 0.912281 2.22596564 Latimeria chalumnae 7897 Chordata Chordata 80.1 1.46e-15   NR XP_064409255.1 7897 g40142 i0 77.6 24.2213114754098 49 11 60.2 0 1 147 109 157 XP_064409255.1 mineralization regulator ANKH-like [Latimeria chalumnae] diamond 5910 80.1 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
28677565 28677565 PRJNA1044115_P_NODE_28167_length_276_cov_1.536946_g27983_i0 PRJNA1044115 28167 276 1.536946 4.24197096 Staurois parvus 386267 Chordata Chordata 53.9 5.93e-7   NR CAI9578133.1 386267 g27983 i0 66.7 1.14130434782609 36 12 39.1 0 23 130 1 36 CAI9578133.1 unnamed protein product, partial [Staurois parvus] diamond 315 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28709178 28709178 PRJNA1044115_P_NODE_39127_length_246_cov_0.867052_g38943_i0 PRJNA1044115 39127 246 0.867052 2.13294792 Hyperolius riggenbachi 752182 Chordata Chordata 65.1 5.14e-10   NR XP_068121767.1 752182 g38943 i0 83.3 3.58536585365854 36 6 43.9 0 64 171 418 453 XP_068121767.1 general transcription factor II-I repeat domain-containing protein 2A-like [Hyperolius riggenbachi] diamond 882 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
28772104 28772104 PRJNA1044115_P_NODE_37567_length_248_cov_0.891429_g37383_i0 PRJNA1044115 37567 248 0.891429 2.21074392 Leucoraja erinaceus 7782 Chordata Chordata 117 6.91e-30   NR XP_055487001.1 7782 g37383 i0 75.3 3.08467741935484 85 15 99.2 2 248 3 181 262 XP_055487001.1 E3 ubiquitin-protein ligase TRIM47-like isoform X1 [Leucoraja erinaceus] diamond 765 118 0.991525423728814 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
28827076 28827076 PRJNA1044115_P_NODE_27568_length_279_cov_1.291262_g27384_i0 PRJNA1044115 27568 279 1.291262 3.60262098 Anura 8342 Chordata Chordata 84.7 1.03e-16   NR MEE6495084.1 8439 g27384 i0 95 6.88172043010753 40 2 43 0 123 4 172 211 MEE6495084.1 hypothetical protein [Ascaphus truei] diamond 1920 85.1 0.995299647473561 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
29214461 29214461 PRJNA1044115_P_NODE_41749_length_242_cov_0.923077_g41565_i0 PRJNA1044115 41749 242 0.923077 2.23384634 Heterodontus francisci 7792 Chordata Chordata 55.1 1.65e-6   NR XP_067873278.1 7792 g41565 i0 100 0.954545454545455 26 0 32.2 0 80 3 55 80 XP_067873278.1 4'-phosphopantetheine phosphatase isoform X3 [Heterodontus francisci] diamond 231 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
29277175 29277175 PRJNA1044115_P_NODE_39089_length_246_cov_0.901734_g38905_i0 PRJNA1044115 39089 246 0.901734 2.21826564 Leptonychotes weddellii 9713 Chordata Chordata 51.2 2.33e-5   NR XP_030889885.1 9713 g38905 i0 87.5 0.853658536585366 24 3 29.3 0 3 74 46 69 XP_030889885.1 succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [Leptonychotes weddellii] diamond 210 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Leptonychotes Leptonychotes weddellii
30035309 30035309 PRJNA1044115_P_NODE_19791_length_328_cov_1.282353_g19607_i0 PRJNA1044115 19791 328 1.282353 4.20611784 Bufo bufo 8384 Chordata Chordata 90.1 2.19e-18   NR XP_040269861.1 8384 g19607 i0 95.7 3.00914634146341 47 2 43 0 326 186 496 542 XP_040269861.1 general transcription factor II-I repeat domain-containing protein 2-like [Bufo bufo] diamond 987 90.9 0.991199119911991 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo bufo
30058614 30058614 PRJNA1044115_P_NODE_36851_length_249_cov_0.886364_g36667_i0 PRJNA1044115 36851 249 0.886364 2.20704636 Rodentia 9989 Chordata Chordata 55.8 9.64e-7   NR XP_036008814.1 10090 g36667 i0 93.1 1.39759036144578 29 2 34.9 0 233 147 206 234 XP_036008814.1 CCR4-NOT transcription complex subunit 3 isoform X3 [Mus musculus] diamond 348 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30193112 30193112 PRJNA1044115_P_NODE_40832_length_243_cov_1.352941_g40648_i0 PRJNA1044115 40832 243 1.352941 3.28764663 Pelobates cultripes 61616 Chordata Chordata 65.1 1.59e-10   NR CAH2321750.1 61616 g40648 i0 48 1.33333333333333 50 26 61.7 0 160 11 71 120 CAH2321750.1 Hypothetical predicted protein [Pelobates cultripes] diamond 324 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
30414699 30414699 PRJNA1044115_P_NODE_35393_length_251_cov_0.876404_g35209_i0 PRJNA1044115 35393 251 0.876404 2.19977404 Nyctereutes procyonoides 34880 Chordata Chordata 43.5 0.0222   NR CAD7676803.1 34880 g35209 i0 53.1 0.585657370517928 49 19 53.8 2 115 249 360 408 CAD7676803.1 unnamed protein product [Nyctereutes procyonoides] diamond 147 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
30477686 30477686 PRJNA1044115_P_NODE_37693_length_248_cov_0.891429_g37509_i0 PRJNA1044115 37693 248 0.891429 2.21074392 Diceros bicornis minor 77932 Chordata Chordata 65.9 2.87e-10   NR KAF5912046.1 77932 g37509 i0 47.4 2.83064516129032 76 40 91.9 0 228 1 484 559 KAF5912046.1 hypothetical protein HPG69_003320 [Diceros bicornis minor] diamond 702 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
30603844 30603844 PRJNA1044115_P_NODE_34133_length_253_cov_0.866667_g33949_i0 PRJNA1044115 34133 253 0.866667 2.19266751 Myxine glutinosa 7769 Chordata Chordata 92.4 1.43e-19   NR XP_067965260.1 7769 g33949 i0 81.5 1.29249011857708 54 10 64 0 162 1 215 268 XP_067965260.1 protein FAM83B-like [Myxine glutinosa] diamond 327 92.8 0.995689655172414 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
30659085 30659085 PRJNA1044115_P_NODE_41253_length_243_cov_0.917647_g41069_i0 PRJNA1044115 41253 243 0.917647 2.22988221 Chordata 7711 Chordata Chordata 64.3 7.85e-10   NR XP_010726358.1 9103 g41069 i0 85.3 2.88888888888889 34 5 42 0 141 242 22 55 XP_010726358.1 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like [Meleagris gallopavo] diamond 702 64.7 0.993817619783617 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
30730294 30730294 PRJNA1044115_P_NODE_35454_length_251_cov_0.876404_g35270_i0 PRJNA1044115 35454 251 0.876404 2.19977404 Lamprotornis superbus 245042 Chordata Chordata 53.5 6.47e-6   NR KAI1230412.1 245042 g35270 i0 77.4 0.370517928286853 31 7 37.1 0 158 250 219 249 KAI1230412.1 hypothetical protein IHE44_0010399 [Lamprotornis superbus] diamond 93 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sturnidae Lamprotornis Lamprotornis superbus
31078043 31078043 PRJNA1044115_P_NODE_41515_length_242_cov_1.556213_g41331_i0 PRJNA1044115 41515 242 1.556213 3.76603546 Engystomops pustulosus 76066 Chordata Chordata 53.1 8.04e-6   NR KAG8591549.1 76066 g41331 i0 92.3 6.01239669421488 26 2 32.2 0 69 146 31 56 KAG8591549.1 hypothetical protein GDO81_000215 [Engystomops pustulosus] diamond 1455 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31235759 31235759 PRJNA1044115_P_NODE_42355_length_239_cov_2.361446_g42171_i0 PRJNA1044115 42355 239 2.361446 5.64385594 Aquarana catesbeiana 8400 Chordata Chordata 72 7.64e-13   NR PIO15961.1 8400 g42171 i0 72.1 1.53138075313808 43 12 54 0 238 110 157 199 PIO15961.1 hypothetical protein AB205_0186000, partial [Aquarana catesbeiana] diamond 366 72 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
31457405 31457405 PRJNA1044115_P_NODE_27956_length_277_cov_1.529412_g27772_i0 PRJNA1044115 27956 277 1.529412 4.23647124 Myxine glutinosa 7769 Chordata Chordata 57.8 2e-7   NR XP_067986719.1 7769 g27772 i0 82.9 1.98194945848375 35 6 37.9 0 124 228 1 35 XP_067986719.1 uncharacterized protein [Myxine glutinosa] diamond 549 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
31457412 31457412 PRJNA1044115_P_NODE_6136_length_635_cov_2.580071_g5963_i0 PRJNA1044115 6136 635 2.580071 16.38345085 Erpetoichthys calabaricus 27687 Chordata Chordata 252 7.36e-75   NR XP_028670689.1 27687 g5963 i0 68.1 1.98425196850394 210 67 99.2 0 632 3 606 815 XP_028670689.1 major vault protein [Erpetoichthys calabaricus] diamond 1260 252 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31615446 31615446 PRJNA1044115_P_NODE_39796_length_245_cov_0.906977_g39612_i0 PRJNA1044115 39796 245 0.906977 2.22209365 Polypterus senegalus 55291 Chordata Chordata 95.1 3.5e-21   NR KAG2469087.1 55291 g39612 i0 72.4 3.97959183673469 58 16 71 0 71 244 124 181 KAG2469087.1 TCB1 transposase, partial [Polypterus senegalus] diamond 975 95.5 0.995811518324607 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32089969 32089969 PRJNA1044115_P_NODE_22478_length_306_cov_3.180258_g22294_i0 PRJNA1044115 22478 306 3.180258 9.73158948 Erpetoichthys calabaricus 27687 Chordata Chordata 70.5 1.02e-11   NR XP_051791274.1 27687 g22294 i0 73.5 2.94117647058824 49 12 47.1 1 97 240 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 900 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32184992 32184992 PRJNA1044115_P_NODE_39758_length_245_cov_0.906977_g39574_i0 PRJNA1044115 39758 245 0.906977 2.22209365 Neotoma lepida 56216 Chordata Chordata 49.3 8.97e-5   NR OBS59020.1 56216 g39574 i0 91.7 2.06938775510204 24 2 29.4 0 70 141 152 175 OBS59020.1 hypothetical protein A6R68_09855 [Neotoma lepida] diamond 507 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida
32902798 32902798 PRJNA1044115_P_NODE_41800_length_242_cov_0.923077_g41616_i0 PRJNA1044115 41800 242 0.923077 2.23384634 Chordata 7711 Chordata Chordata 65.9 2.38e-10   NR NP_001089864.1 8355 g41616 i0 100 4.7603305785124 32 0 39.7 0 240 145 340 371 NP_001089864.1 uncharacterized protein LOC734930 [Xenopus laevis] diamond 1152 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32902799 32902799 PRJNA1044115_P_NODE_42100_length_241_cov_2.690476_g41916_i0 PRJNA1044115 42100 241 2.690476 6.48404716 Metazoa 33208 Chordata Chordata 76.3 5.71e-14   NR CAH1238177.1 7740 g41916 i0 41.8 10.1701244813278 67 39 83.4 0 237 37 489 555 CAH1238177.1 NOTCH1 [Branchiostoma lanceolatum] diamond 2451 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;