RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1044115" and tax_phylum = "Bacillota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1044115 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26877277 26877277 PRJNA1044115_P_NODE_29841_length_269_cov_1.408163_g29657_i0 PRJNA1044115 29841 269 1.408163 3.78795847 Enterococcus faecalis 1351 Bacteria Bacteria 115 2.04e-31   NR WP_375855466.1 1351 g29657 i0 72.7 0.981412639405205 88 24 98.1 0 266 3 1 88 WP_375855466.1 hypothetical protein [Enterococcus faecalis] diamond 264 115 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis
28930065 28930065 PRJNA1044115_P_NODE_36248_length_250_cov_0.881356_g36064_i0 PRJNA1044115 36248 250 0.881356 2.20339 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 42.4 0.049   NR MCR4696246.1 1898203 g36064 i0 36.4 0.66 55 35 66 0 171 7 178 232 MCR4696246.1 hypothetical protein [Lachnospiraceae bacterium] diamond 165 42.4 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
32280045 32280045 PRJNA1044115_P_NODE_40239_length_244_cov_0.912281_g40055_i0 PRJNA1044115 40239 244 0.912281 2.22596564 Paenibacillus solisilvae 2486751 Bacteria Bacteria 42 0.0231   NR WP_379191403.1 2486751 g40055 i0 31.7 0.504098360655738 41 28 50.4 0 20 142 73 113 WP_379191403.1 TM2 domain-containing protein [Paenibacillus solisilvae] diamond 123 42 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus solisilvae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;