RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1044115" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1044115 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31299111 31299111 PRJNA1044115_P_NODE_17195_length_352_cov_2.369176_g17011_i0 PRJNA1044115 17195 352 2.369176 8.33949952 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 76.3 5.61e-15   NR XP_004348720.1 1257118 g17011 i0 43 0.852272727272727 100 51 84.4 2 321 25 15 109 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 300 76.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32690381 32690381 PRJNA1044115_P_NODE_23660_length_299_cov_1.380531_g23476_i0 PRJNA1044115 23660 299 1.380531 4.12778769 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 47 0.00202   NR KAH3758215.1 1580589 g23476 i0 38.9 3.11036789297659 72 43 71.2 1 283 71 24 95 KAH3758215.1 hypothetical protein Pelo_9924 [Pelomyxa schiedti] diamond 930 47 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;