RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1041773" and tax_phylum = "Candidatus Binatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1041773 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24396764 24396764 PRJNA1041773_P_NODE_69820_length_262_cov_2.444444_g69487_i0 PRJNA1041773 69820 262 2.444444 6.40444328 Candidatus Binataceae bacterium 2785449 Bacteria Bacteria 118 1.2499999999999998e-29   NR HXW83751.1 2785449 g69487 i0 62.1 5.98854961832061 87 33 99.6 0 2 262 249 335 HXW83751.1 acyl-CoA dehydrogenase family protein [Candidatus Binataceae bacterium] diamond 1569 118 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia Candidatus Binatales Candidatus Binataceae   Candidatus Binataceae bacterium
31235745 31235745 PRJNA1041773_P_NODE_83055_length_249_cov_0.875000_g82722_i0 PRJNA1041773 83055 249 0.875 2.17875 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 42 0.0271   NR HJQ85597.1 2838779 g82722 i0 46.5 0.518072289156627 43 23 51.8 0 246 118 70 112 HJQ85597.1 PEGA domain-containing protein [Candidatus Binatia bacterium] diamond 129 42 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
31552397 31552397 PRJNA1041773_P_NODE_55816_length_288_cov_1.432558_g55483_i0 PRJNA1041773 55816 288 1.432558 4.12576704 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 92 3.18e-19   NR HEV7735719.1 2838779 g55483 i0 53.1 1 96 36 91.7 2 1 264 864 958 HEV7735719.1 hypothetical protein [Candidatus Binatia bacterium] diamond 288 92 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;