RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1041773" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1041773 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30035304 30035304 PRJNA1041773_P_NODE_89811_length_246_cov_0.890173_g89478_i0 PRJNA1041773 89811 246 0.890173 2.18982558 Lingula anatina 7574 Brachiopoda other_Eukaryota 52.4 1.55e-5   NR XP_013403493.1 7574 g89478 i0 65.7 1.28048780487805 35 12 42.7 0 71 175 203 237 XP_013403493.1 OTU domain-containing protein 7B isoform X1 [Lingula anatina] diamond 315 52.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32026727 32026727 PRJNA1041773_P_NODE_82358_length_249_cov_0.875000_g82025_i0 PRJNA1041773 82358 249 0.875 2.17875 Lingula anatina 7574 Brachiopoda other_Eukaryota 67.8 6.35e-11   NR XP_013381256.1 7574 g82025 i0 49.2 0.734939759036145 61 31 73.5 0 58 240 1264 1324 XP_013381256.1 uncharacterized protein LOC106152279 [Lingula anatina] diamond 183 67.8 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
32216613 32216613 PRJNA1041773_P_NODE_96238_length_243_cov_0.905882_g95905_i0 PRJNA1041773 96238 243 0.905882 2.20129326 Lingula anatina 7574 Brachiopoda other_Eukaryota 50.4 6.88e-5   NR XP_013412724.1 7574 g95905 i0 51.2 0.530864197530864 43 21 53.1 0 217 89 342 384 XP_013412724.1 uncharacterized protein LOC106175329 [Lingula anatina] diamond 129 50.4 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;