RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1041773" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 6 ✖

bioproject 1

  • PRJNA1041773 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1445369 1445369 PRJNA1041773_P_NODE_68762_length_264_cov_1.612565_g68429_i0 PRJNA1041773 68762 264 1.612565 4.2571716 Halococcus sp. IIIV-5B 2321230 Archaea Archaea 146 2.03e-38   NR WP_233553902.1 2321230 g68429 i0 97.7 0.988636363636364 87 2 98.9 0 3 263 502 588 WP_233553902.1 Eco57I restriction-modification methylase domain-containing protein [Halococcus sp. IIIV-5B] diamond 261 146 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sp. IIIV-5B
27216576 27216576 PRJNA1041773_P_NODE_56302_length_287_cov_1.439252_g55969_i0 PRJNA1041773 56302 287 1.439252 4.13065324 Halobacteriales 2235 Archaea Archaea 195 9.19e-57   NR WP_114578533.1 2282654 g55969 i0 96.8 2.96864111498258 94 3 98.3 0 287 6 485 578 WP_114578533.1 aconitate hydratase [Saliphagus sp. LR7] diamond 852 195 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Saliphagus Saliphagus sp. LR7
29237860 29237860 PRJNA1041773_P_NODE_56349_length_287_cov_1.439252_g56016_i0 PRJNA1041773 56349 287 1.439252 4.13065324 Methanosarcina 2207 Archaea Archaea 175 6.3e-50   NR WP_281853456.1 2210 g56016 i0 86.3 1.98606271777003 95 13 99.3 0 1 285 247 341 WP_281853456.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase [Methanosarcina thermophila] diamond 570 175 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila
32184978 32184978 PRJNA1041773_P_NODE_80718_length_250_cov_0.870056_g80385_i0 PRJNA1041773 80718 250 0.870056 2.17514 Methanocellales archaeon 2666334 Archaea Archaea 50.4 7.95e-5   NR MDI6902733.1 2666334 g80385 i0 41.5 0.78 65 34 78 2 249 55 662 722 MDI6902733.1 PGF-CTERM sorting domain-containing protein [Methanocellales archaeon] diamond 195 50.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales     Methanocellales archaeon
32216606 32216606 PRJNA1041773_P_NODE_65318_length_270_cov_1.532995_g64985_i0 PRJNA1041773 65318 270 1.532995 4.1390865 Candidatus Alkanophaga liquidiphilum 2971473 Archaea Archaea 45.1 0.00475   NR MDF2955454.1 2971473 g64985 i0 48.9 1.17777777777778 47 24 52.2 0 101 241 100 146 MDF2955454.1 hypothetical protein [Candidatus Alkanophaga liquidiphilum] diamond 318 45.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Alkanophagales   Candidatus Alkanophaga Candidatus Alkanophaga liquidiphilum
32311761 32311761 PRJNA1041773_P_NODE_98559_length_242_cov_0.911243_g98226_i0 PRJNA1041773 98559 242 0.911243 2.20520806 Halococcus hamelinensis 332168 Archaea Archaea 160 7.289999999999999e-46   NR WP_029601871.1 332168 g98226 i0 98.8 0.991735537190083 80 1 99.2 0 242 3 121 200 WP_029601871.1 CaiB/BaiF CoA transferase family protein [Halococcus hamelinensis] diamond 240 160 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus hamelinensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;