RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1041773" and tax_clade = "Methanomada group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJNA1041773 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16747853 16747853 PRJNA1041773_P_NODE_80894_length_250_cov_0.870056_g80561_i0 PRJNA1041773 80894 250 0.870056 2.17514 Methanothermobacter 145260 Archaea Archaea 129 2.17e-33   NR WP_112093349.1 680118 g80561 i0 96.7 3.6 60 2 72 0 183 4 232 291 WP_112093349.1 F420-non-reducing hydrogenase subunit MvhA [Methanothermobacter tenebrarum] diamond 900 129 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter tenebrarum
16747985 16747985 PRJNA1041773_P_NODE_91314_length_245_cov_0.895349_g90981_i0 PRJNA1041773 91314 245 0.895349 2.19360505 Methanobacteriaceae archaeon 2099680 Archaea Archaea 149 6.73e-42   NR NYB26509.1 2099680 g90981 i0 92.6 0.991836734693878 81 6 99.2 0 244 2 25 105 NYB26509.1 M42 family metallopeptidase [Methanobacteriaceae archaeon] diamond 243 149 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
26655060 26655060 PRJNA1041773_P_NODE_83021_length_249_cov_0.875000_g82688_i0 PRJNA1041773 83021 249 0.875 2.17875 Methanobacteriaceae archaeon 41_258 1635284 Archaea Archaea 97.1 1.46e-22   NR KUK01290.1 1635284 g82688 i0 100 0.614457831325301 51 0 61.4 0 96 248 156 206 KUK01290.1 MAG: hypothetical protein XD44_0643 [Methanobacteriaceae archaeon 41_258] diamond 153 97.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon 41_258
28961841 28961841 PRJNA1041773_P_NODE_93768_length_244_cov_0.900585_g93435_i0 PRJNA1041773 93768 244 0.900585 2.1974274 Methanobacteriaceae archaeon 2099680 Archaea Archaea 158 1.65e-45   NR MBC7119430.1 2099680 g93435 i0 96.3 0.983606557377049 80 3 98.4 0 3 242 111 190 MBC7119430.1 DNA polymerase subunit beta [Methanobacteriaceae archaeon] diamond 240 158 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
30532690 30532690 PRJNA1041773_P_NODE_86873_length_247_cov_0.885057_g86540_i0 PRJNA1041773 86873 247 0.885057 2.18609079 Archaea 2157 Archaea Archaea 166 7.53e-51   NR KUK00404.1 1635284 g86540 i0 97.6 1.9919028340081 82 2 99.6 0 2 247 25 106 KUK00404.1 MAG: hypothetical protein XD44_1532 [Methanobacteriaceae archaeon 41_258] diamond 492 166 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon 41_258
32533150 32533150 PRJNA1041773_P_NODE_17739_length_493_cov_1.823810_g17409_i0 PRJNA1041773 17739 493 1.82381 8.9913833 Methanobacteriaceae archaeon 2099680 Archaea Archaea 128 1.57e-35   NR MDI3484369.1 2099680 g17409 i0 100 0.432048681541582 71 0 43.2 0 158 370 1 71 MDI3484369.1 hypothetical protein [Methanobacteriaceae archaeon] diamond 213 128 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;