RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1036688" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1036688 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30375192 30375192 PRJNA1036688_P_NODE_2612_length_421_cov_1.901042_g2322_i0 PRJNA1036688 2612 421 1.901042 8.00338682 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 138 8.75e-35   NR TMW56563.1 41045 g2322 i0 80.5 2.47980997624703 87 17 62 0 41 301 567 653 TMW56563.1 hypothetical protein Poli38472_006573 [Pythium oligandrum] diamond 1044 139 0.992805755395683 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30856636 30856636 PRJNA1036688_P_NODE_10194_length_168_cov_1.183206_g9902_i0 PRJNA1036688 10194 168 1.183206 1.98778608 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 79 1.6e-15   NR XP_024575780.1 4781 g9902 i0 72.7 0.982142857142857 55 15 98.2 0 166 2 264 318 XP_024575780.1 methylthioribose-1-phosphate isomerase [Plasmopara halstedii] diamond 165 79 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;