RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1036688" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1036688 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5272543 5272543 PRJNA1036688_P_NODE_8985_length_181_cov_3.479167_g8693_i0 PRJNA1036688 8985 181 3.479167 6.29729227 Cladochytrium tenue 1604274 Fungi Fungi 107 3.11e-27   NR KAJ1544066.1 1604274 g8693 i0 80 22.7734806629834 60 12 99.4 0 2 181 61 120 KAJ1544066.1 60S ribosomal protein L15, partial [Cladochytrium tenue] diamond 4122 107 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium tenue
9936213 9936213 PRJNA1036688_P_NODE_9508_length_175_cov_2.253623_g9216_i0 PRJNA1036688 9508 175 2.253623 3.94384025 Globomyces pollinis-pini 382532 Fungi Fungi 89.4 5.5e-19   NR KAI8893489.1 382532 g9216 i0 71.9 0.977142857142857 57 16 97.7 0 3 173 420 476 KAI8893489.1 P-loop containing nucleoside triphosphate hydrolase protein [Globomyces pollinis-pini] diamond 171 89.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini
23121905 23121905 PRJNA1036688_P_NODE_11759_length_154_cov_1.658120_g11467_i0 PRJNA1036688 11759 154 1.65812 2.5535048 Kappamyces sp. JEL 2040833 Fungi Fungi 75.9 6.69e-15   NR KAJ3346861.1 2724210 g11467 i0 74 0.974025974025974 50 13 97.4 0 3 152 160 209 KAJ3346861.1 40S ribosomal protein [Kappamyces sp. JEL0680] diamond 150 75.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces sp. JEL0680
31828594 31828594 PRJNA1036688_P_NODE_7477_length_204_cov_3.035928_g7185_i0 PRJNA1036688 7477 204 3.035928 6.19329312 Eukaryota 2759 Fungi Fungi 99 2.0499999999999999e-23   NR KAJ3387474.1 109889 g7185 i0 67.2 21.4411764705882 64 21 94.1 0 12 203 64 127 KAJ3387474.1 40S ribosomal protein S4 [Lobulomyces angularis] diamond 4374 100 0.99 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis
31995043 31995043 PRJNA1036688_P_NODE_5958_length_241_cov_1.892157_g5666_i0 PRJNA1036688 5958 241 1.892157 4.56009837 Geranomyces variabilis 109894 Fungi Fungi 86.7 2.01e-19   NR KAJ3168399.1 109894 g5666 i0 61.2 1.73029045643154 67 26 83.4 0 202 2 39 105 KAJ3168399.1 60S acidic ribosomal protein P2 [Geranomyces variabilis] diamond 417 86.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
32839794 32839794 PRJNA1036688_P_NODE_10580_length_164_cov_1.811024_g10288_i0 PRJNA1036688 10580 164 1.811024 2.97007936 Chytridiomycota 4761 Fungi Fungi 48.5 4.58e-5   NR KAJ3376926.1 109889 g10288 i0 58 3.56707317073171 50 21 91.5 0 164 15 20 69 KAJ3376926.1 hypothetical protein HDU92_008808 [Lobulomyces angularis] diamond 585 48.9 0.991820040899796 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;