RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1036688" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1036688 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27540847 27540847 PRJNA1036688_P_NODE_11324_length_157_cov_2.875000_g11032_i0 PRJNA1036688 11324 157 2.875 4.51375 uncultured Peptostreptococcus sp. 169971 Bacteria Bacteria 83.2 5.33e-17   NR WP_314278689.1 169971 g11032 i0 78.8 0.993630573248408 52 11 99.4 0 1 156 147 198 WP_314278689.1 Rib/alpha-like domain-containing protein, partial [uncultured Peptostreptococcus sp.] diamond 156 83.2 1 Bacteria   Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcus uncultured Peptostreptococcus sp.
27540848 27540848 PRJNA1036688_P_NODE_12004_length_152_cov_1.686957_g11712_i0 PRJNA1036688 12004 152 1.686957 2.56417464 [Clostridium] innocuum 1522 Bacteria Bacteria 78.2 8.08e-17   NR WP_156113307.1 1522 g11712 i0 74 0.986842105263158 50 13 98.7 0 152 3 80 129 WP_156113307.1 ribonuclease H family protein, partial [[Clostridium] innocuum] diamond 150 78.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium [Clostridium] innocuum
29214424 29214424 PRJNA1036688_P_NODE_4149_length_309_cov_2.444853_g3857_i0 PRJNA1036688 4149 309 2.444853 7.55459577 Bacillus thuringiensis 1428 Bacteria Bacteria 42.7 0.0227   NR WP_197266154.1 1428 g3857 i0 37.9 0.563106796116505 58 30 53.4 2 80 244 26 80 WP_197266154.1 DUF3992 domain-containing protein [Bacillus thuringiensis] diamond 174 42.7 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;