RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1036688" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1036688 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27730518 27730518 PRJNA1036688_P_NODE_8764_length_184_cov_2.639456_g8472_i0 PRJNA1036688 8764 184 2.639456 4.85659904 Caerostris darwini 1538125 Arthropoda Arthropoda 75.9 5.06e-15   NR GIY25719.1 1538125 g8472 i0 72.5 0.831521739130435 51 14 83.2 0 29 181 153 203 GIY25719.1 hypothetical protein CDAR_263751 [Caerostris darwini] diamond 153 75.9 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Araneidae Caerostris Caerostris darwini
31457386 31457386 PRJNA1036688_P_NODE_11076_length_160_cov_1.089431_g10784_i0 PRJNA1036688 11076 160 1.089431 1.7430896 Chironomus tepperi 113505 Arthropoda Arthropoda 89.7 3.24e-19   NR XP_070497457.1 113505 g10784 i0 88.5 0.975 52 6 97.5 0 158 3 804 855 XP_070497457.1 protein Smaug [Chironomus tepperi] diamond 156 89.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Chironomidae Chironomus Chironomus tepperi
31552383 31552383 PRJNA1036688_P_NODE_10336_length_166_cov_2.379845_g10044_i0 PRJNA1036688 10336 166 2.379845 3.9505427 Ctenocephalides felis 7515 Arthropoda Arthropoda 92 3.76e-20   NR XP_026467740.1 7515 g10044 i0 75.5 3.79518072289157 53 13 95.8 0 6 164 27 79 XP_026467740.1 aspartate aminotransferase, mitochondrial [Ctenocephalides felis] diamond 630 92 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Siphonaptera Pulicidae Ctenocephalides Ctenocephalides felis
32026710 32026710 PRJNA1036688_P_NODE_11538_length_156_cov_0.983193_g11246_i0 PRJNA1036688 11538 156 0.983193 1.53378108 Chironomus tepperi 113505 Arthropoda Arthropoda 82.8 1.08e-18   NR XP_070507023.1 113505 g11246 i0 87 0.884615384615385 46 6 88.5 0 151 14 82 127 XP_070507023.1 late histone H2B.2.1-like [Chironomus tepperi] diamond 138 82.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Chironomidae Chironomus Chironomus tepperi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;