RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1036688" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1036688 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24395680 24395680 PRJNA1036688_P_NODE_10400_length_166_cov_0.992248_g10108_i0 PRJNA1036688 10400 166 0.992248 1.64713168 Brachybacterium 43668 Bacteria Bacteria 81.6 8.03e-17   NR WP_377018317.1 2623841 g10108 i0 100 2.96385542168675 41 0 74.1 0 1 123 247 287 WP_377018317.1 MULTISPECIES: carbohydrate ABC transporter permease [unclassified Brachybacterium] diamond 492 81.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium  
27635605 27635605 PRJNA1036688_P_NODE_6004_length_240_cov_0.950739_g5712_i0 PRJNA1036688 6004 240 0.950739 2.2817736 Kitasatospora purpeofusca 67352 Bacteria Bacteria 42.4 0.0497   NR WP_266315073.1 67352 g5712 i0 42.1 0.7125 57 31 70 2 204 37 338 393 WP_266315073.1 hypothetical protein [Kitasatospora purpeofusca] diamond 171 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora purpeofusca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;