RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1036688" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1036688 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14198260 14198260 PRJNA1036688_P_NODE_5432_length_258_cov_1.583710_g5140_i0 PRJNA1036688 5432 258 1.58371 4.0859718 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 139 1.93e-37   NR XP_003293941.1 5786 g5140 i0 76.5 6.96511627906977 85 20 98.8 0 3 257 292 376 XP_003293941.1 S-adenosylmethionine synthetase [Dictyostelium purpureum] diamond 1797 139 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
29971978 29971978 PRJNA1036688_P_NODE_9611_length_174_cov_1.729927_g9319_i0 PRJNA1036688 9611 174 1.729927 3.01007298 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 48.5 1.24e-4   NR KYQ91967.1 361077 g9319 i0 47.9 2.46551724137931 48 24 82.8 1 152 9 54 100 KYQ91967.1 glycoside hydrolase family 25 protein [Tieghemostelium lacteum] diamond 429 48.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;