RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1035005" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28456518 28456518 PRJNA1035005_P_NODE_85826_length_242_cov_0.923077_g85420_i0 PRJNA1035005 85826 242 0.923077 2.23384634 Spirochaetes bacterium GWE1_32_154 1802184 Bacteria Bacteria 92.4 6.73e-20   NR OHD40715.1 1802184 g85420 i0 68.5 0.669421487603306 54 17 66.9 0 4 165 349 402 OHD40715.1 MAG: [FeFe] hydrogenase H-cluster maturation GTPase HydF [Spirochaetes bacterium GWE1_32_154] diamond 162 92.4 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetes bacterium GWE1_32_154
28866805 28866805 PRJNA1035005_P_NODE_69148_length_247_cov_3.362069_g68742_i0 PRJNA1035005 69148 247 3.362069 8.30431043 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 55.8 4.56e-7   NR MDC7249496.1 2791017 g68742 i0 46.7 0.728744939271255 60 29 72.9 2 66 245 4 60 MDC7249496.1 hypothetical protein [Sphaerochaetaceae bacterium] diamond 180 55.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium
29048417 29048417 PRJNA1035005_P_NODE_87048_length_239_cov_2.463855_g86642_i0 PRJNA1035005 87048 239 2.463855 5.88861345 Spirochaetales 136 Bacteria Bacteria 41.6 0.0186   NR WP_318679644.1 166 g86642 i0 60 0.753138075313807 30 12 37.7 0 148 237 14 43 WP_318679644.1 RNA-binding protein [Treponema sp.] diamond 180 42 0.990476190476191 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
29782464 29782464 PRJNA1035005_P_NODE_53391_length_253_cov_1.316667_g52985_i0 PRJNA1035005 53391 253 1.316667 3.33116751 Spirochaetia bacterium 2053615 Bacteria Bacteria 48.9 2.46e-4   NR GHV91014.1 2053615 g52985 i0 44.7 1.16205533596838 47 26 55.7 0 112 252 18 64 GHV91014.1 carbonic anhydrase [Spirochaetia bacterium] diamond 294 48.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
29805928 29805928 PRJNA1035005_P_NODE_64531_length_249_cov_1.215909_g64125_i0 PRJNA1035005 64531 249 1.215909 3.02761341 Treponema 157 Bacteria Bacteria 97.1 3.1200000000000004e-21   NR OHE68036.1 1802379 g64125 i0 64.6 6.95180722891566 82 23 98.8 1 246 1 469 544 OHE68036.1 MAG: hypothetical protein A2Z99_06545 [Treponema sp. GWB1_62_6] diamond 1731 97.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. GWB1_62_6
29908963 29908963 PRJNA1035005_P_NODE_65711_length_249_cov_0.886364_g65305_i0 PRJNA1035005 65711 249 0.886364 2.20704636 Turneriella sp. 2717305 Bacteria Bacteria 166 3.09e-49   NR HNJ66461.1 2717305 g65305 i0 98.8 1.97590361445783 83 1 100 0 1 249 127 209 HNJ66461.1 DUF3108 domain-containing protein [Turneriella sp.] diamond 492 166 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella sp.
32564817 32564817 PRJNA1035005_P_NODE_64219_length_249_cov_1.573864_g63813_i0 PRJNA1035005 64219 249 1.573864 3.91892136 Sphaerochaeta sp. 1972642 Bacteria Bacteria 148 2.7299999999999993e-42   NR MCH3906981.1 1972642 g63813 i0 93.3 0.903614457831325 75 5 90.4 0 248 24 186 260 MCH3906981.1 carbohydrate-binding protein [Sphaerochaeta sp.] diamond 225 148 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;