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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA1035005" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1035005 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
168863 168863 PRJNA1035005_P_NODE_46001_length_262_cov_1.317460_g45595_i0 PRJNA1035005 46001 262 1.31746 3.4517452 Opisthokonta 33154 Nematoda Nematoda 84.3 1.09e-16   NR KJH53698.1 29172 g45595 i0 54.5 12.8702290076336 77 35 88.2 0 233 3 1686 1762 KJH53698.1 CTP synthase [Dictyocaulus viviparus] diamond 3372 84.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
1443410 1443410 PRJNA1035005_P_NODE_18322_length_308_cov_1.323404_g17916_i0 PRJNA1035005 18322 308 1.323404 4.07608432 Pristionchus mayeri 1317129 Nematoda Nematoda 108 4.33e-25   NR GMR45422.1 1317129 g17916 i0 63.2 2.45454545454545 87 32 84.7 0 263 3 9 95 GMR45422.1 hypothetical protein PMAYCL1PPCAC_15617, partial [Pristionchus mayeri] diamond 756 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
2283113 2283113 PRJNA1035005_P_NODE_58962_length_251_cov_1.185393_g58556_i0 PRJNA1035005 58962 251 1.185393 2.97533643 Opisthokonta 33154 Nematoda Nematoda 131 1.92e-35   NR KAF8385892.1 54126 g58556 i0 80.7 20.8326693227092 83 16 99.2 0 249 1 5 87 KAF8385892.1 rpl-5 [Pristionchus pacificus] diamond 5229 132 0.992424242424242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
6546705 6546705 PRJNA1035005_P_NODE_13626_length_332_cov_1.505792_g13220_i0 PRJNA1035005 13626 332 1.505792 4.99922944 Rhabditida 6236 Nematoda Nematoda 179 2.17e-50   NR VDO71113.1 6339 g13220 i0 84.4 42.3614457831325 109 17 98.5 0 329 3 316 424 VDO71113.1 unnamed protein product [Heligmosomoides polygyrus] diamond 14064 179 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
12486621 12486621 PRJNA1035005_P_NODE_18150_length_309_cov_0.991525_g17744_i0 PRJNA1035005 18150 309 0.991525 3.06381225 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 132 4.13e-34   NR XP_024506008.1 34506 g17744 i0 60 6.85436893203883 100 40 97.1 0 9 308 166 265 XP_024506008.1 Homogentisate 1,2-dioxygenase [Strongyloides ratti] diamond 2118 133 0.992481203007519 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
28361528 28361528 PRJNA1035005_P_NODE_53606_length_253_cov_0.866667_g53200_i0 PRJNA1035005 53606 253 0.866667 2.19266751 Oscheius tipulae 141969 Nematoda Nematoda 114 3.36e-28   NR AFO72898.1 141969 g53200 i0 76.4 0.853754940711462 72 17 85.4 0 5 220 288 359 AFO72898.1 vitellogenin 1, partial [Oscheius tipulae] diamond 216 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
28614238 28614238 PRJNA1035005_P_NODE_11427_length_350_cov_1.043321_g11022_i0 PRJNA1035005 11427 350 1.043321 3.6516235 Anisakis simplex 6269 Nematoda Nematoda 50.8 9.95e-5   NR VDK45428.1 6269 g11022 i0 34.8 1.63714285714286 66 43 56.6 0 238 41 138 203 VDK45428.1 unnamed protein product [Anisakis simplex] diamond 573 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
30193041 30193041 PRJNA1035005_P_NODE_3252_length_608_cov_2.256075_g2862_i0 PRJNA1035005 3252 608 2.256075 13.716936 Pristionchus pacificus 54126 Nematoda Nematoda 46.6 0.0428   NR KAF8359571.1 54126 g2862 i0 36.8 0.335526315789474 68 35 33.6 2 275 72 969 1028 KAF8359571.1 hypothetical protein PRIPAC_94566 [Pristionchus pacificus] diamond 204 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
30280367 30280367 PRJNA1035005_P_NODE_90432_length_206_cov_4.248120_g90025_i0 PRJNA1035005 90432 206 4.24812 8.7511272 Rhabditida 6236 Nematoda Nematoda 90.5 8.53e-20   NR VDM46117.1 6265 g90025 i0 69.1 8.9126213592233 68 17 99 2 204 1 88 151 VDM46117.1 unnamed protein product [Toxocara canis] diamond 1836 90.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
30603773 30603773 PRJNA1035005_P_NODE_32533_length_279_cov_1.514563_g32127_i0 PRJNA1035005 32533 279 1.514563 4.22563077 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 50.8 1.92e-5   NR WKY01110.1 27835 g32127 i0 37.1 1.90322580645161 62 39 66.7 0 188 3 29 90 WKY01110.1 hypothetical protein Q1695_015258 [Nippostrongylus brasiliensis] diamond 531 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
30761954 30761954 PRJNA1035005_P_NODE_8994_length_376_cov_1.587459_g8591_i0 PRJNA1035005 8994 376 1.587459 5.96884584 Parelaphostrongylus tenuis 148309 Nematoda Nematoda 46.2 0.00906   NR KAJ1366417.1 148309 g8591 i0 30.8 0.853723404255319 107 54 75 5 327 46 99 198 KAJ1366417.1 hypothetical protein KIN20_027073 [Parelaphostrongylus tenuis] diamond 321 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Parelaphostrongylus Parelaphostrongylus tenuis
30975154 30975154 PRJNA1035005_P_NODE_11734_length_347_cov_1.138686_g11329_i0 PRJNA1035005 11734 347 1.138686 3.95124042 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 127 1.21e-35   NR CAD5208042.1 6326 g11329 i0 69.3 9.95965417867435 88 27 76.1 0 307 44 1 88 CAD5208042.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 3456 128 0.9921875 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
31552345 31552345 PRJNA1035005_P_NODE_1616_length_972_cov_3.438265_g1289_i0 PRJNA1035005 1616 972 3.438265 33.4199358 Meloidogyne graminicola 189291 Nematoda Nematoda 119 1.7700000000000002e-27   NR AVZ46778.1 189291 g1289 i0 52.2 0.41358024691358 134 61 41 2 313 711 117 248 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 402 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31702265 31702265 PRJNA1035005_P_NODE_76237_length_245_cov_0.906977_g75831_i0 PRJNA1035005 76237 245 0.906977 2.22209365 Rhabditida 6236 Nematoda Nematoda 83.2 2.21e-16   NR VDM39802.1 6265 g75831 i0 52.5 8.81632653061224 80 38 98 0 244 5 41 120 VDM39802.1 unnamed protein product [Toxocara canis] diamond 2160 83.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32784809 32784809 PRJNA1035005_P_NODE_14560_length_326_cov_1.233202_g14154_i0 PRJNA1035005 14560 326 1.233202 4.02023852 Mesorhabditis spiculigera 96644 Nematoda Nematoda 100 5.57e-22   NR CAJ0585849.1 96644 g14154 i0 46.7 0.846625766871166 92 49 84.7 0 278 3 1319 1410 CAJ0585849.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 276 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
32879342 32879342 PRJNA1035005_P_NODE_78860_length_244_cov_0.912281_g78454_i0 PRJNA1035005 78860 244 0.912281 2.22596564 Caenorhabditis brenneri 135651 Nematoda Nematoda 86.3 1.23e-17   NR EGT37515.1 135651 g78454 i0 45.7 4.81967213114754 81 43 98.4 1 242 3 184 264 EGT37515.1 hypothetical protein CAEBREN_16632 [Caenorhabditis brenneri] diamond 1176 86.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;