RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1035005" and tax_phylum = "Deinococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1035005 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24394887 24394887 PRJNA1035005_P_NODE_38040_length_272_cov_1.512563_g37634_i0 PRJNA1035005 38040 272 1.512563 4.11417136 Deinococcus taklimakanensis 536443 Bacteria Bacteria 150 1.1399999999999997e-42   NR WP_386845986.1 536443 g37634 i0 100 0.871323529411765 79 0 87.1 0 35 271 1 79 WP_386845986.1 NAD(P)-dependent oxidoreductase [Deinococcus taklimakanensis] diamond 237 150 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis
26591710 26591710 PRJNA1035005_P_NODE_45681_length_262_cov_1.650794_g45275_i0 PRJNA1035005 45681 262 1.650794 4.32508028 Deinococcus reticulitermitis 856736 Bacteria Bacteria 99.8 1.37e-23   NR WP_092265650.1 856736 g45275 i0 57.6 0.973282442748092 85 36 97.3 0 5 259 105 189 WP_092265650.1 hypothetical protein [Deinococcus reticulitermitis] diamond 255 99.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus reticulitermitis
29782466 29782466 PRJNA1035005_P_NODE_57771_length_252_cov_0.871508_g57365_i0 PRJNA1035005 57771 252 0.871508 2.19620016 Truepera radiovictrix 332249 Bacteria Bacteria 55.5 1.36e-6   NR WP_013177855.1 332249 g57365 i0 41.2 1.01190476190476 85 48 98.8 1 3 251 129 213 WP_013177855.1 hypothetical protein [Truepera radiovictrix] diamond 255 55.5 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
29837532 29837532 PRJNA1035005_P_NODE_52531_length_254_cov_1.292818_g52125_i0 PRJNA1035005 52531 254 1.292818 3.28375772 Thermus 270 Bacteria Bacteria 46.6 0.0016   NR WP_287930650.1 275 g52125 i0 35.7 1.65354330708661 70 45 82.7 0 253 44 167 236 WP_287930650.1 HD domain-containing protein, partial [Thermus sp.] diamond 420 46.6 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
32113666 32113666 PRJNA1035005_P_NODE_29678_length_283_cov_1.347619_g29272_i0 PRJNA1035005 29678 283 1.347619 3.81376177 Deinococcus 1298 Bacteria Bacteria 169 3.51e-49   NR WP_353544200.1 457454 g29272 i0 98.9 1.99293286219081 94 1 99.6 0 282 1 197 290 WP_353544200.1 MFS transporter [Deinococcus xinjiangensis] diamond 564 170 0.994117647058824 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
32248446 32248446 PRJNA1035005_P_NODE_3918_length_541_cov_2.079060_g3520_i0 PRJNA1035005 3918 541 2.07906 11.2477146 Trueperaceae bacterium 2026798 Bacteria Bacteria 137 1.25e-33   NR MFA5567487.1 2026798 g3520 i0 43.5 1.02033271719039 184 93 98.2 5 541 11 375 554 MFA5567487.1 hypothetical protein [Trueperaceae bacterium] diamond 552 137 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;