contig_metadata
8 rows where analysis = "diamond", bioproject = "PRJNA1035005" and tax_phylum = "Apicomplexa"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13761266 | 13761266 | PRJNA1035005_P_NODE_5411_length_456_cov_2.454308_g5011_i0 | PRJNA1035005 | 5411 | 456 | 2.454308 | 11.19164448 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 205 | 1.5799999999999998e-58 | NR | KAK1442945.1 | 33632 | g5011 | i0 | 65.3 | 10.8026315789474 | 150 | 52 | 98.7 | 0 | 450 | 1 | 258 | 407 | KAK1442945.1 translation elongation factor-related protein [Babesia gibsoni] | diamond | 4926 | 205 | 1 | Eukaryota | Sar | Apicomplexa | Aconoidasida | Piroplasmida | Babesiidae | Babesia | Babesia gibsoni | ||
| 23120891 | 23120891 | PRJNA1035005_P_NODE_15399_length_321_cov_1.185484_g14993_i0 | PRJNA1035005 | 15399 | 321 | 1.185484 | 3.80540364 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 119 | 4.16e-30 | NR | XP_067916539.1 | 483139 | g14993 | i0 | 65.1 | 15.3177570093458 | 83 | 29 | 77.6 | 0 | 37 | 285 | 163 | 245 | XP_067916539.1 rna recognition motif-containing protein, partial [Cystoisospora suis] | diamond | 4917 | 119 | 1 | Eukaryota | Sar | Apicomplexa | Conoidasida | Eucoccidiorida | Sarcocystidae | Cystoisospora | Cystoisospora suis | ||
| 27919526 | 27919526 | PRJNA1035005_P_NODE_12085_length_344_cov_1.151292_g11680_i0 | PRJNA1035005 | 12085 | 344 | 1.151292 | 3.96044448 | Gregarina niphandrodes | 110365 | SAR_Eukaryotes | SAR_Eukaryotes | 48.5 | 4.54e-4 | NR | XP_011128624.1 | 110365 | g11680 | i0 | 54.1 | 0.322674418604651 | 37 | 17 | 32.3 | 0 | 6 | 116 | 14 | 50 | XP_011128624.1 putative AN1-type zinc finger protein 6 [Gregarina niphandrodes] | diamond | 111 | 48.5 | 1 | Eukaryota | Sar | Apicomplexa | Conoidasida | Eugregarinorida | Gregarinidae | Gregarina | Gregarina niphandrodes | ||
| 30375181 | 30375181 | PRJNA1035005_P_NODE_5552_length_451_cov_1.706349_g5152_i0 | PRJNA1035005 | 5552 | 451 | 1.706349 | 7.69563399 | Apicomplexa | 5794 | SAR_Eukaryotes | SAR_Eukaryotes | 206 | 1.1199999999999999e-60 | NR | WBY56824.1 | 73239 | g5152 | i0 | 62.9 | 18.0731707317073 | 151 | 55 | 99.8 | 1 | 2 | 451 | 353 | 503 | WBY56824.1 thioredoxin reductase [Plasmodium yoelii yoelii] | diamond | 8151 | 208 | 0.990384615384615 | Eukaryota | Sar | Apicomplexa | Aconoidasida | Haemosporida | Plasmodiidae | Plasmodium | Plasmodium yoelii | ||
| 31172330 | 31172330 | PRJNA1035005_P_NODE_8915_length_377_cov_1.766447_g8512_i0 | PRJNA1035005 | 8915 | 377 | 1.766447 | 6.65950519 | Cyclospora cayetanensis | 88456 | SAR_Eukaryotes | SAR_Eukaryotes | 58.2 | 5.75e-7 | NR | OEH79838.1 | 88456 | g8512 | i0 | 30.5 | 2.89655172413793 | 118 | 81 | 93.9 | 1 | 357 | 4 | 54 | 170 | OEH79838.1 tetratricopeptide repeat-containing protein [Cyclospora cayetanensis] | diamond | 1092 | 58.2 | 1 | Eukaryota | Sar | Apicomplexa | Conoidasida | Eucoccidiorida | Eimeriidae | Cyclospora | Cyclospora cayetanensis | ||
| 32248445 | 32248445 | PRJNA1035005_P_NODE_32138_length_280_cov_1.130435_g31732_i0 | PRJNA1035005 | 32138 | 280 | 1.130435 | 3.165218 | Toxoplasma gondii ME49 | 508771 | SAR_Eukaryotes | SAR_Eukaryotes | 124 | 4.54e-34 | NR | XP_002367420.1 | 508771 | g31732 | i0 | 75.9 | 2.53928571428571 | 79 | 18 | 83.6 | 1 | 234 | 1 | 10 | 88 | XP_002367420.1 translation initiation factor eIF-5A, putative [Toxoplasma gondii ME49] | diamond | 711 | 124 | 1 | Eukaryota | Sar | Apicomplexa | Conoidasida | Eucoccidiorida | Sarcocystidae | Toxoplasma | Toxoplasma gondii | ||
| 32398434 | 32398434 | PRJNA1035005_P_NODE_31339_length_281_cov_1.125000_g30933_i0 | PRJNA1035005 | 31339 | 281 | 1.125 | 3.16125 | Toxoplasma | 5810 | SAR_Eukaryotes | SAR_Eukaryotes | 132 | 1.09e-35 | NR | 5XXB_N | 5811 | g30933 | i0 | 72 | 1.7508896797153 | 82 | 23 | 87.5 | 0 | 34 | 279 | 66 | 147 | 5XXB_N Chain N, Ribosomal protein uL13 [Toxoplasma gondii] | diamond | 492 | 132 | 1 | Eukaryota | Sar | Apicomplexa | Conoidasida | Eucoccidiorida | Sarcocystidae | Toxoplasma | Toxoplasma gondii | ||
| 32879341 | 32879341 | PRJNA1035005_P_NODE_68140_length_248_cov_0.891429_g67734_i0 | PRJNA1035005 | 68140 | 248 | 0.891429 | 2.21074392 | Cyclospora cayetanensis | 88456 | SAR_Eukaryotes | SAR_Eukaryotes | 54.7 | 1.67e-6 | NR | XP_022588443.2 | 88456 | g67734 | i0 | 43.8 | 2.37096774193548 | 73 | 38 | 84.7 | 1 | 35 | 244 | 14 | 86 | XP_022588443.2 proteasome subunit beta type-6 [Cyclospora cayetanensis] | diamond | 588 | 54.7 | 1 | Eukaryota | Sar | Apicomplexa | Conoidasida | Eucoccidiorida | Eimeriidae | Cyclospora | Cyclospora cayetanensis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;