RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA1035005" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 14 ✖

bioproject 1

  • PRJNA1035005 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5271814 5271814 PRJNA1035005_P_NODE_57805_length_252_cov_0.871508_g57399_i0 PRJNA1035005 57805 252 0.871508 2.19620016 root 1 Root_unresolved Root_unresolved 79.7 3.19e-15   NR MCX9085574.1 2032688 g57399 i0 48.2 9.77380952380952 83 42 98.8 1 249 1 215 296 MCX9085574.1 DEAD/DEAH box helicase [Candidatus Methanoperedens sp.] diamond 2463 79.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
23121486 23121486 PRJNA1035005_P_NODE_9999_length_364_cov_2.041237_g9594_i0 PRJNA1035005 9999 364 2.041237 7.43010268 Methanobacteriaceae archaeon 2099680 Archaea Archaea 204 3.8999999999999995e-62   NR MBX7076500.1 2099680 g9594 i0 81.4 0.972527472527473 118 22 97.3 0 357 4 12 129 MBX7076500.1 elongation factor Tu [Methanobacteriaceae archaeon] diamond 354 204 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
27161300 27161300 PRJNA1035005_P_NODE_58762_length_251_cov_1.443820_g58356_i0 PRJNA1035005 58762 251 1.44382 3.6239882 Haloferax sp. Atlit-1 2253 Archaea Archaea 112 2.64e-30   NR WP_119712927.1 2077204 g58356 i0 88.6 0.836653386454183 70 8 83.7 0 251 42 31 100 WP_119712927.1 hypothetical protein [Haloferax sp. Atlit-10N] diamond 210 112 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-10N
27627618 27627618 PRJNA1035005_P_NODE_24544_length_290_cov_1.078341_g24138_i0 PRJNA1035005 24544 290 1.078341 3.1271889 root 1 Root_unresolved Root_unresolved 47 0.00203   NR WP_109968281.1 668570 g24138 i0 51.6 0.589655172413793 31 15 32.1 0 138 230 273 303 WP_109968281.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain [Methanospirillum lacunae] diamond 171 47 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum lacunae
27659219 27659219 PRJNA1035005_P_NODE_26744_length_287_cov_1.224299_g26338_i0 PRJNA1035005 26744 287 1.224299 3.51373813 Methanobacteriota 28890 Archaea Archaea 85.1 7.28e-17   NR MCZ7358014.1 2032688 g26338 i0 58 2.05923344947735 69 28 72.1 1 80 286 305 372 MCZ7358014.1 proline--tRNA ligase [Candidatus Methanoperedens sp.] diamond 591 85.5 0.9953216374269 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
28140884 28140884 PRJNA1035005_P_NODE_23465_length_291_cov_1.431193_g23059_i0 PRJNA1035005 23465 291 1.431193 4.16477163 Methanobrevibacter sp. 66852 Archaea Archaea 43.9 0.00762   NR MBO7695419.1 66852 g23059 i0 44.2 1.11340206185567 52 25 52.6 2 14 166 3 51 MBO7695419.1 hypothetical protein [Methanobrevibacter sp.] diamond 324 43.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28298412 28298412 PRJNA1035005_P_NODE_40986_length_268_cov_1.600000_g40580_i0 PRJNA1035005 40986 268 1.6 4.288 Haloarcula sp. K1 1622207 Archaea Archaea 152 1.59e-41   NR WP_064289135.1 1622207 g40580 i0 80.7 0.985074626865672 88 17 98.5 0 266 3 133 220 WP_064289135.1 DUF6610 family protein [Haloarcula sp. K1] diamond 264 152 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula sp. K1
28298430 28298430 PRJNA1035005_P_NODE_82946_length_243_cov_0.917647_g82540_i0 PRJNA1035005 82946 243 0.917647 2.22988221 Methanobrevibacter sp. 66852 Archaea Archaea 92.8 2.84e-22   NR MBQ6630168.1 66852 g82540 i0 61.3 0.925925925925926 75 27 90.1 1 9 227 40 114 MBQ6630168.1 hypothetical protein [Methanobrevibacter sp.] diamond 225 92.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28488059 28488059 PRJNA1035005_P_NODE_87127_length_239_cov_2.090361_g86721_i0 PRJNA1035005 87127 239 2.090361 4.99596279 Halorarum salinum 2743089 Archaea Archaea 87.4 2.27e-19   NR WP_179269447.1 2743089 g86721 i0 66.1 0.740585774058577 59 20 74.1 0 230 54 9 67 WP_179269447.1 hypothetical protein [Halorarum salinum] diamond 177 87.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorarum Halorarum salinum
29151354 29151354 PRJNA1035005_P_NODE_26089_length_288_cov_1.097674_g25683_i0 PRJNA1035005 26089 288 1.097674 3.16130112 Natronomonas sp. LN261 2750669 Archaea Archaea 190 3.2400000000000002e-59   NR WP_181691241.1 2750669 g25683 i0 98.9 0.989583333333333 95 1 99 0 286 2 54 148 WP_181691241.1 DUF7114 family protein [Natronomonas sp. LN261] diamond 285 190 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
29624090 29624090 PRJNA1035005_P_NODE_12110_length_344_cov_0.863469_g11705_i0 PRJNA1035005 12110 344 0.863469 2.97033336 Thermococcus 2263 Archaea Archaea 89.4 2.22e-19   NR WP_076612194.1 2263 g11705 i0 47.7 1.88372093023256 111 53 92.4 3 329 12 59 169 WP_076612194.1 MULTISPECIES: IS607-like element ISTsi1 family transposase [Thermococcus] diamond 648 89.4 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus  
32564813 32564813 PRJNA1035005_P_NODE_41519_length_267_cov_2.979381_g41113_i0 PRJNA1035005 41519 267 2.979381 7.95494727 Haladaptatus sp. CMSO5 3120514 Archaea Archaea 63.9 1.7e-9   NR WP_332900305.1 3120514 g41113 i0 42.2 0.932584269662921 83 48 93.3 0 262 14 228 310 WP_332900305.1 archaea-specific SMC-related protein [Haladaptatus sp. CMSO5] diamond 249 63.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus sp. CMSO5
32596116 32596116 PRJNA1035005_P_NODE_65500_length_249_cov_0.886364_g65094_i0 PRJNA1035005 65500 249 0.886364 2.20704636 Methanosphaera sp. 2666342 Archaea Archaea 59.7 4.17e-8   NR MEE3325102.1 2666342 g65094 i0 40 1.72289156626506 70 42 84.3 0 214 5 408 477 MEE3325102.1 hypothetical protein [Methanosphaera sp.] diamond 429 59.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
32784816 32784816 PRJNA1035005_P_NODE_4080_length_529_cov_1.614035_g3682_i0 PRJNA1035005 4080 529 1.614035 8.53824515 Methanoregula sp. 2052170 Archaea Archaea 60.8 3.45e-7   NR MFA7304797.1 2052170 g3682 i0 29.8 1.32703213610586 114 73 64.7 3 525 184 22 128 MFA7304797.1 NosD domain-containing protein [Methanoregula sp.] diamond 702 60.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;