RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA1035005" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 13 ✖

bioproject 1

  • PRJNA1035005 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
169180 169180 PRJNA1035005_P_NODE_8721_length_380_cov_1.263844_g8319_i0 PRJNA1035005 8721 380 1.263844 4.8026072 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 86.7 4.19e-19   NR KAJ4453711.1 342808 g8319 i0 56.8 1.22368421052632 81 29 61.6 2 16 249 2 79 KAJ4453711.1 putative 60S acidic ribosomal protein P1 [Paratrimastix pyriformis] diamond 465 86.7 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
23120845 23120845 PRJNA1035005_P_NODE_10379_length_360_cov_1.425087_g9974_i0 PRJNA1035005 10379 360 1.425087 5.1303132 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 120 2.6199999999999997e-30   NR KAJ5079679.1 1746090 g9974 i0 50.4 2.975 119 55 99.2 2 358 2 26 140 KAJ5079679.1 cysteine protease rdl2-related [Anaeramoeba ignava] diamond 1071 120 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
29466348 29466348 PRJNA1035005_P_NODE_10970_length_354_cov_1.387900_g10565_i0 PRJNA1035005 10970 354 1.3879 4.913166 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 87.8 1.4e-17   NR KAJ5072157.1 1746090 g10565 i0 56.6 0.644067796610169 76 33 64.4 0 284 57 235 310 KAJ5072157.1 nucleic acid binding protein [Anaeramoeba ignava] diamond 228 87.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
29521850 29521850 PRJNA1035005_P_NODE_33470_length_278_cov_1.448780_g33064_i0 PRJNA1035005 33470 278 1.44878 4.0276084 Anaeramoeba 2055135 Root_unresolved Root_unresolved 105 6.779999999999998e-24   NR KAJ5068815.1 1746090 g33064 i0 56 2.76258992805755 84 35 90.6 1 277 26 641 722 KAJ5068815.1 villin [Anaeramoeba ignava] diamond 768 105 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
29624109 29624109 PRJNA1035005_P_NODE_56590_length_252_cov_0.871508_g56184_i0 PRJNA1035005 56590 252 0.871508 2.19620016 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 53.5 6.28e-6   NR XP_067772619.1 135588 g56184 i0 60 0.476190476190476 40 16 47.6 0 250 131 407 446 XP_067772619.1 vacuolar protein sorting-associated protein 4A [Histomonas meleagridis] diamond 120 53.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30603779 30603779 PRJNA1035005_P_NODE_52573_length_254_cov_1.237569_g52167_i0 PRJNA1035005 52573 254 1.237569 3.14342526 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 81.3 1.2e-15   NR KAJ5066923.1 1746090 g52167 i0 52.4 0.968503937007874 82 36 96.9 1 8 253 201 279 KAJ5066923.1 severin [Anaeramoeba ignava] diamond 246 81.3 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
30603786 30603786 PRJNA1035005_P_NODE_6293_length_428_cov_1.318310_g5891_i0 PRJNA1035005 6293 428 1.31831 5.6423668 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 162 2.42e-48   NR KAJ5077140.1 1746090 g5891 i0 63 3.56775700934579 127 47 89 0 383 3 1 127 KAJ5077140.1 60S ribosomal protein L32 AND DNA-DIRECTED RNA polymerase II SUBUNIT N [Anaeramoeba ignava] diamond 1527 162 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
30983200 30983200 PRJNA1035005_P_NODE_55154_length_253_cov_0.866667_g54748_i0 PRJNA1035005 55154 253 0.866667 2.19266751 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 94.7 1.8899999999999998e-20   NR KAJ3452484.1 1746091 g54748 i0 49.4 6.90118577075099 83 42 98.4 0 1 249 32 114 KAJ3452484.1 sterile20-like kinase isoform b-related [Anaeramoeba flamelloides] diamond 1746 94.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
31868306 31868306 PRJNA1035005_P_NODE_78497_length_244_cov_1.502924_g78091_i0 PRJNA1035005 78497 244 1.502924 3.66713456 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 84 7.32e-17   NR KAJ4460283.1 342808 g78091 i0 52.5 0.983606557377049 80 38 98.4 0 242 3 234 313 KAJ4460283.1 putative SPFH domain/Band 7 family protein [Paratrimastix pyriformis] diamond 240 84 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
32184932 32184932 PRJNA1035005_P_NODE_52398_length_254_cov_1.464088_g51992_i0 PRJNA1035005 52398 254 1.464088 3.71878352 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 66.2 4.87e-11   NR KAJ3450635.1 1746091 g51992 i0 66.7 1.2755905511811 51 17 60.2 0 1 153 132 182 KAJ3450635.1 ras-like protein rasd [Anaeramoeba flamelloides] diamond 324 66.2 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
32525223 32525223 PRJNA1035005_P_NODE_41459_length_268_cov_1.128205_g41053_i0 PRJNA1035005 41459 268 1.128205 3.0235894 root 1 Root_unresolved Root_unresolved 44.7 0.00755   NR KAJ6248791.1 1746091 g41053 i0 38.2 1.36567164179104 55 29 61.6 1 185 21 21 70 KAJ6248791.1 hypothetical protein M0813_17282 [Anaeramoeba flamelloides] diamond 366 45.1 0.991130820399113 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
32690321 32690321 PRJNA1035005_P_NODE_11320_length_351_cov_1.104317_g10915_i0 PRJNA1035005 11320 351 1.104317 3.87615267 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 50.4 2.51e-4   NR KAJ5073099.1 1746090 g10915 i0 27 0.948717948717949 111 81 94.9 0 337 5 131 241 KAJ5073099.1 alpha-actinin sarcomeric-like protein [Anaeramoeba ignava] diamond 333 50.4 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
32722006 32722006 PRJNA1035005_P_NODE_30520_length_282_cov_1.153110_g30114_i0 PRJNA1035005 30520 282 1.15311 3.2517702 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 72.4 2.1e-12   NR KAJ3437215.1 1746091 g30114 i0 39.5 4.86170212765957 86 52 91.5 0 263 6 161 246 KAJ3437215.1 rho/rac/cdc gtpase-activating protein [Anaeramoeba flamelloides] diamond 1371 72.4 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;