RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1034995" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1034995 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26741873 26741873 PRJNA1034995_S_NODE_17661_length_428_cov_25.716883_g17506_i0 PRJNA1034995 17661 428 25.716883 110.06825924 Metazoa 33208 Cnidaria other_Eukaryota 118 1.71e-28   NR XP_031551892.1 6105 g17506 i0 95.2 10.0163551401869 62 3 43.5 0 300 115 181 242 XP_031551892.1 COP9 signalosome complex subunit 2-like [Actinia tenebrosa] diamond 4287 119 0.991596638655462 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Actinia Actinia tenebrosa
31646835 31646835 PRJNA1034995_S_NODE_47057_length_174_cov_3.862595_g46901_i0 PRJNA1034995 47057 174 3.862595 6.7209153 Paramuricea clavata 317549 Cnidaria other_Eukaryota 44.3 0.00418   NR CAB4016621.1 317549 g46901 i0 60.7 0.948275862068966 28 11 48.3 0 2 85 543 570 CAB4016621.1 Hypothetical predicted protein [Paramuricea clavata] diamond 165 44.3 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Plexauridae Paramuricea Paramuricea clavata
32564796 32564796 PRJNA1034995_S_NODE_12639_length_609_cov_18.489399_g12525_i0 PRJNA1034995 12639 609 18.489399 112.60043991 Orbicella faveolata 48498 Cnidaria other_Eukaryota 60.8 6.47e-7   NR XP_020617195.1 48498 g12525 i0 82.4 2.45320197044335 34 6 16.7 0 12 113 62 95 XP_020617195.1 LOW QUALITY PROTEIN: kinesin heavy chain-like [Orbicella faveolata] diamond 1494 61.2 0.993464052287582 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Merulinidae Orbicella Orbicella faveolata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;