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contig_metadata

21 rows where analysis = "diamond", bioproject = "PRJNA1034995" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 21 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1034995 · 21 ✖

analysis 1

  • diamond · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2718761 2718761 PRJNA1034995_S_NODE_12843_length_591_cov_29.560219_g12719_i0 PRJNA1034995 12843 591 29.560219 174.70089429 Blastococcus sp. 1873459 Bacteria Bacteria 345 1.3e-117   NR MBJ7450580.1 1873459 g12719 i0 92.3 0.99492385786802 196 15 99.5 0 590 3 56 251 MBJ7450580.1 c-type cytochrome biogenesis protein CcsB [Blastococcus sp.] diamond 588 345 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp.
12922100 12922100 PRJNA1034995_S_NODE_24531_length_322_cov_17.311828_g24375_i0 PRJNA1034995 24531 322 17.311828 55.74408616 Nocardioides guangzhouensis 2497878 Bacteria Bacteria 79 9.67e-15   NR WP_134715139.1 2497878 g24375 i0 53.8 2.95341614906832 104 46 96 2 319 11 39 141 WP_134715139.1 ATP-binding protein [Nocardioides guangzhouensis] diamond 951 79 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides guangzhouensis
20569678 20569678 PRJNA1034995_S_NODE_38397_length_213_cov_9.229412_g38241_i0 PRJNA1034995 38397 213 9.229412 19.65864756 Corynebacterium 1716 Bacteria Bacteria 82.4 2.41e-16   NR WP_291474195.1 1720 g38241 i0 62.7 1.6056338028169 59 22 83.1 0 194 18 5 63 WP_291474195.1 phage portal protein [Corynebacterium sp.] diamond 342 82.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp.
24394421 24394421 PRJNA1034995_S_NODE_16100_length_463_cov_28.211905_g15947_i0 PRJNA1034995 16100 463 28.211905 130.62112015 Actinomycetes 1760 Bacteria Bacteria 108 2.79e-27   NR MCW2744423.1 1785 g15947 i0 50.4 1.56803455723542 119 58 77.1 1 451 95 11 128 MCW2744423.1 ATP-binding region ATPase domain protein [Mycobacterium sp.] diamond 726 108 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
27216564 27216564 PRJNA1034995_S_NODE_27502_length_292_cov_9.610442_g27346_i0 PRJNA1034995 27502 292 9.610442 28.06249064 Bacteria 2 Bacteria Bacteria 76.3 3.63e-14   NR CAA9455702.1 349277 g27346 i0 82.1 1.22260273972603 39 7 40.1 0 122 6 1 39 CAA9455702.1 MAG: Hydrolase, alpha/beta fold family [uncultured Rubrobacteraceae bacterium] diamond 357 76.6 0.996083550913838 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae   uncultured Rubrobacteraceae bacterium
27911365 27911365 PRJNA1034995_S_NODE_14105_length_525_cov_42.524896_g13959_i0 PRJNA1034995 14105 525 42.524896 223.255704 Actinomycetes 1760 Bacteria Bacteria 112 3.1200000000000003e-27   NR WP_083950264.1 354426 g13959 i0 88.5 4.82857142857143 61 7 34.9 0 184 2 1 61 WP_083950264.1 TetR/AcrR family transcriptional regulator [Herbidospora yilanensis] diamond 2535 112 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Herbidospora Herbidospora yilanensis
28108886 28108886 PRJNA1034995_S_NODE_21365_length_363_cov_18.312500_g21209_i0 PRJNA1034995 21365 363 18.3125 66.474375 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 117 6.44e-30   NR HYI17391.1 2586742 g21209 i0 71.8 3.20661157024793 78 22 64.5 0 345 112 168 245 HYI17391.1 c-type cytochrome [Solirubrobacteraceae bacterium] diamond 1164 117 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
28140877 28140877 PRJNA1034995_S_NODE_53805_length_153_cov_2.927273_g53649_i0 PRJNA1034995 53805 153 2.927273 4.47872769 Cutibacterium acnes 1747 Bacteria Bacteria 40.8 0.0253   NR MES7760928.1 1747 g53649 i0 84.2 0.823529411764706 19 3 37.3 0 1 57 75 93 MES7760928.1 hypothetical protein [Cutibacterium acnes] diamond 126 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
28772025 28772025 PRJNA1034995_S_NODE_15727_length_474_cov_16.983759_g15576_i0 PRJNA1034995 15727 474 16.983759 80.50301766 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 46.2 0.023   NR HXD26173.1 2021380 g15576 i0 42 0.316455696202532 50 29 31.6 0 204 55 72 121 HXD26173.1 hypothetical protein [Propionibacteriaceae bacterium] diamond 150 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
29308755 29308755 PRJNA1034995_S_NODE_37129_length_221_cov_1.550562_g36973_i0 PRJNA1034995 37129 221 1.550562 3.42674202 Geodermatophilus tzadiensis 1137988 Bacteria Bacteria 42.7 0.0285   NR WP_106276122.1 1137988 g36973 i0 34.9 0.855203619909502 63 28 67.9 1 219 70 250 312 WP_106276122.1 helix-turn-helix transcriptional regulator [Geodermatophilus tzadiensis] diamond 189 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus tzadiensis
30098237 30098237 PRJNA1034995_S_NODE_42692_length_192_cov_3.610738_g42536_i0 PRJNA1034995 42692 192 3.610738 6.93261696 Rubrobacteraceae bacterium 2740537 Bacteria Bacteria 100 8.6e-23   NR MBA2510810.1 2740537 g42536 i0 89.1 0.859375 55 6 85.9 0 26 190 1 55 MBA2510810.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacteraceae bacterium] diamond 165 100 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae   Rubrobacteraceae bacterium
30129614 30129614 PRJNA1034995_S_NODE_34632_length_236_cov_3.813472_g34476_i0 PRJNA1034995 34632 236 3.813472 8.99979392 Streptomyces sp. NPDC 1931 Bacteria Bacteria 48.5 2.93e-4   NR WP_366745918.1 3155475 g34476 i0 40.7 0.75 59 35 75 0 3 179 24 82 WP_366745918.1 protein NO VEIN domain-containing protein [Streptomyces sp. NPDC047002] diamond 177 48.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC047002
30256679 30256679 PRJNA1034995_S_NODE_29332_length_275_cov_7.616379_g29176_i0 PRJNA1034995 29332 275 7.616379 20.94504225 Actinomycetota bacterium 2900548 Bacteria Bacteria 67.8 6.08e-11   NR MDQ5830553.1 2900548 g29176 i0 84.6 2.10545454545455 39 6 42.5 0 28 144 203 241 MDQ5830553.1 IS110 family transposase [Actinomycetota bacterium] diamond 579 67.8 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30414614 30414614 PRJNA1034995_S_NODE_21853_length_356_cov_20.504792_g21697_i0 PRJNA1034995 21853 356 20.504792 72.99705952 uncultured Rubrobacteraceae bacterium 349277 Bacteria Bacteria 105 7.13e-25   NR CAA9458149.1 349277 g21697 i0 89.2 0.547752808988764 65 6 54.8 1 2 196 175 238 CAA9458149.1 MAG: hypothetical protein AVDCRST_MAG02-1677 [uncultured Rubrobacteraceae bacterium] diamond 195 105 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae   uncultured Rubrobacteraceae bacterium
30414620 30414620 PRJNA1034995_S_NODE_45373_length_181_cov_1.333333_g45217_i0 PRJNA1034995 45373 181 1.333333 2.41333273 Streptosporangiales bacterium 2604148 Bacteria Bacteria 93.6 2e-20   NR MFI5063979.1 2604148 g45217 i0 66.1 0.977900552486188 59 20 97.8 0 180 4 484 542 MFI5063979.1 CocE/NonD family hydrolase [Streptosporangiales bacterium] diamond 177 93.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales     Streptosporangiales bacterium
30698587 30698587 PRJNA1034995_S_NODE_20174_length_381_cov_16.452663_g20019_i0 PRJNA1034995 20174 381 16.452663 62.68464603 Actinomycetota bacterium 2900548 Bacteria Bacteria 52.4 4.15e-5   NR MDP9431928.1 2900548 g20019 i0 64.3 0.330708661417323 42 12 33.1 1 242 367 3 41 MDP9431928.1 ArdC family protein [Actinomycetota bacterium] diamond 126 52.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30761925 30761925 PRJNA1034995_S_NODE_23394_length_336_cov_11.914676_g23238_i0 PRJNA1034995 23394 336 11.914676 40.03331136 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 43.1 0.00643   NR HLH45617.1 2201156 g23238 i0 43.2 0.330357142857143 37 21 33 0 169 279 20 56 HLH45617.1 hypothetical protein [Acidimicrobiales bacterium] diamond 111 43.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
30856588 30856588 PRJNA1034995_S_NODE_13774_length_539_cov_27.858871_g13631_i0 PRJNA1034995 13774 539 27.858871 150.15931469 Actinomycetota bacterium 2900548 Bacteria Bacteria 191 1.94e-56   NR MDQ3637409.1 2900548 g13631 i0 92.2 1.13543599257885 102 8 56.8 0 308 3 1 102 MDQ3637409.1 DUF4968 domain-containing protein [Actinomycetota bacterium] diamond 612 191 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31520628 31520628 PRJNA1034995_S_NODE_24776_length_319_cov_33.612319_g24620_i0 PRJNA1034995 24776 319 33.612319 107.22329761 Actinomycetota bacterium 2900548 Bacteria Bacteria 91.3 3.8600000000000005e-21   NR MDQ3503888.1 2900548 g24620 i0 62.4 0.949843260188088 101 27 92.2 6 296 3 1 93 MDQ3503888.1 cell division protein SepF [Actinomycetota bacterium] diamond 303 91.3 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31678504 31678504 PRJNA1034995_S_NODE_31477_length_258_cov_12.944186_g31321_i0 PRJNA1034995 31477 258 12.944186 33.39599988 Nocardioidaceae bacterium 1871072 Bacteria Bacteria 42.7 0.0241   NR MDX6302584.1 1871072 g31321 i0 42 0.581395348837209 50 28 57 1 101 247 80 129 MDX6302584.1 hypothetical protein [Nocardioidaceae bacterium] diamond 150 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium
32627345 32627345 PRJNA1034995_S_NODE_45040_length_182_cov_3.093525_g44884_i0 PRJNA1034995 45040 182 3.093525 5.6302155 Kitasatospora purpeofusca 67352 Bacteria Bacteria 43.5 0.00867   NR MFD7410599.1 67352 g44884 i0 36.4 0.906593406593407 55 35 90.7 0 4 168 148 202 MFD7410599.1 LuxR C-terminal-related transcriptional regulator [Kitasatospora purpeofusca] diamond 165 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora purpeofusca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;