RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1034995" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1034995 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30216649 30216649 PRJNA1034995_S_NODE_33352_length_244_cov_16.457711_g33196_i0 PRJNA1034995 33352 244 16.457711 40.15681484 Bacteria 2 Bacteria Bacteria 120 7.880000000000001e-33   NR MBI2814774.1 2026771 g33196 i0 77.6 1.81967213114754 76 17 93.4 0 242 15 3 78 MBI2814774.1 GxxExxY protein [Opitutia bacterium] diamond 444 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
30698589 30698589 PRJNA1034995_S_NODE_44854_length_183_cov_2.235714_g44698_i0 PRJNA1034995 44854 183 2.235714 4.09135662 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.0427   NR MBZ0151840.1 2026780 g44698 i0 35.7 0.688524590163934 42 27 68.9 0 19 144 121 162 MBZ0151840.1 ABC transporter permease [Planctomycetota bacterium] diamond 126 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31489086 31489086 PRJNA1034995_S_NODE_43116_length_190_cov_4.564626_g42960_i0 PRJNA1034995 43116 190 4.564626 8.6727894 Planctomycetota bacterium 2026780 Bacteria Bacteria 42 0.0303   NR TET35009.1 2026780 g42960 i0 38.9 0.568421052631579 36 22 56.8 0 120 13 23 58 TET35009.1 MAG: hypothetical protein E3J72_12805 [Planctomycetota bacterium] diamond 108 42 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;