RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1034995" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1034995 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14196978 14196978 PRJNA1034995_S_NODE_17892_length_423_cov_21.184211_g17737_i0 PRJNA1034995 17892 423 21.184211 89.60921253 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 230 5.32e-75   NR PRP84958.1 1890364 g17737 i0 99.1 0.822695035460993 116 1 82.3 0 423 76 40 155 PRP84958.1 40S ribosomal protein S11 [Planoprotostelium fungivorum] diamond 348 230 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
27414669 27414669 PRJNA1034995_S_NODE_34643_length_236_cov_3.331606_g34487_i0 PRJNA1034995 34643 236 3.331606 7.86259016 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 142 6.15e-40   NR PRP75353.1 1890364 g34487 i0 90.3 0.915254237288136 72 6 90.3 1 225 13 205 276 PRP75353.1 hypothetical protein PROFUN_05664 [Planoprotostelium fungivorum] diamond 216 142 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;