RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1034994" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1034994 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29940544 29940544 PRJNA1034994_P_NODE_9931_length_242_cov_0.911243_g9847_i0 PRJNA1034994 9931 242 0.911243 2.20520806 Treponemataceae bacterium 2854022 Bacteria Bacteria 76.3 1.03e-14   NR HOT63295.1 2854022 g9847 i0 79.5 0.545454545454545 44 9 54.5 0 242 111 183 226 HOT63295.1 50S ribosomal protein L1 [Treponemataceae bacterium] diamond 132 76.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae   Treponemataceae bacterium
31203732 31203732 PRJNA1034994_P_NODE_8335_length_246_cov_1.323699_g8251_i0 PRJNA1034994 8335 246 1.323699 3.25629954 Candidatus Treponema faecavium 2838769 Bacteria Bacteria 113 6.67e-28   NR HIW35625.1 2838769 g8251 i0 70.4 2.96341463414634 81 22 98.8 1 245 3 66 144 HIW35625.1 polyprenyl synthetase family protein [Candidatus Treponema faecavium] diamond 729 113 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Candidatus Treponema faecavium
32311699 32311699 PRJNA1034994_P_NODE_7999_length_247_cov_0.885057_g7915_i0 PRJNA1034994 7999 247 0.885057 2.18609079 Treponema lecithinolyticum 53418 Bacteria Bacteria 80.5 1.76e-15   NR WP_385987346.1 53418 g7915 i0 100 0.425101214574899 35 0 42.5 0 107 3 1 35 WP_385987346.1 electron transport complex subunit RsxC [Treponema lecithinolyticum] diamond 105 80.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema lecithinolyticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;