RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1034994" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1034994 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27035134 27035134 PRJNA1034994_P_NODE_7982_length_247_cov_0.885057_g7898_i0 PRJNA1034994 7982 247 0.885057 2.18609079 Malassezia cuniculi 948313 Fungi Fungi 147 6.829999999999999e-40   NR WFD36591.1 948313 g7898 i0 81.7 0.995951417004049 82 15 99.6 0 247 2 115 196 WFD36591.1 hypothetical protein MCUN1_003474 [Malassezia cuniculi] diamond 246 147 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia cuniculi
32311698 32311698 PRJNA1034994_P_NODE_6199_length_255_cov_1.692308_g6115_i0 PRJNA1034994 6199 255 1.692308 4.3153854 Phakopsora pachyrhizi 170000 Fungi Fungi 151 2.51e-41   NR CAH7689118.1 170000 g6115 i0 82.1 0.988235294117647 84 15 98.8 0 255 4 384 467 CAH7689118.1 hypothetical protein PPACK8108_LOCUS24189 [Phakopsora pachyrhizi] diamond 252 151 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Phakopsoraceae Phakopsora Phakopsora pachyrhizi
32533099 32533099 PRJNA1034994_P_NODE_5199_length_266_cov_1.720207_g5115_i0 PRJNA1034994 5199 266 1.720207 4.57575062 Malassezia sp. CBS 17886 3031751 Fungi Fungi 98.6 1.1e-21   NR WFD30199.1 3031751 g5115 i0 56.8 0.992481203007519 88 35 99.2 1 265 2 415 499 WFD30199.1 MAPK-activated protein kinase Srk1 [Malassezia sp. CBS 17886] diamond 264 98.6 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia sp. CBS 17886

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;