RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1032461" and tax_phylum = "Uroviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Uroviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1032461 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28077342 28077342 PRJNA1032461_S_NODE_14185_length_169_cov_0.866667_g14087_i0 PRJNA1032461 14185 169 0.866667 1.46466723 Pseudomonas phage vB_PsaM_M1 2995601 Viruses Viruses 73.2 2.35e-13   NR UZS00927.1 2995601 g14087 i0 62.3 2.85798816568047 53 20 94.1 0 161 3 4 56 UZS00927.1 tail sheath protein [Pseudomonas phage vB_PsaM_M1] diamond 483 73.2 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Andersonviridae   Pseudomonas phage vB_PaeM_M1
29719010 29719010 PRJNA1032461_S_NODE_14870_length_168_cov_1.882353_g14772_i0 PRJNA1032461 14870 168 1.882353 3.16235304 Caudoviricetes sp. 2832643 Viruses Viruses 73.2 1.77e-15   NR DAI61056.1 2832643 g14772 i0 67.9 0.946428571428571 53 15 94.6 1 160 2 2 52 DAI61056.1 MAG TPA: repressor [Caudoviricetes sp.] diamond 159 73.2 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;