RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1032461" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1032461 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29805922 29805922 PRJNA1032461_S_NODE_18111_length_165_cov_0.896552_g18013_i0 PRJNA1032461 18111 165 0.896552 1.4793108 Myxococcia 32015 Bacteria Bacteria 65.9 8.63e-11   NR MDB4945668.1 1971228 g18013 i0 64.8 2.94545454545455 54 19 98.2 0 2 163 272 325 MDB4945668.1 hypothetical protein [Labilithrix sp.] diamond 486 65.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
29900933 29900933 PRJNA1032461_S_NODE_15051_length_168_cov_1.184874_g14953_i0 PRJNA1032461 15051 168 1.184874 1.99058832 Myxococcia 32015 Bacteria Bacteria 77 1.05e-14   NR MBX3191304.1 1971228 g14953 i0 64.8 2.92857142857143 54 19 96.4 0 2 163 102 155 MBX3191304.1 nickel pincer cofactor biosynthesis protein LarC [Labilithrix sp.] diamond 492 77 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
30193015 30193015 PRJNA1032461_S_NODE_19192_length_164_cov_0.904348_g19094_i0 PRJNA1032461 19192 164 0.904348 1.48313072 Labilithrix sp. 1971228 Bacteria Bacteria 89 6.5e-19   NR MBX3204713.1 1971228 g19094 i0 68.5 1.97560975609756 54 17 98.8 0 164 3 111 164 MBX3204713.1 DnaJ domain-containing protein [Labilithrix sp.] diamond 324 89 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
30983170 30983170 PRJNA1032461_S_NODE_17714_length_166_cov_0.888889_g17616_i0 PRJNA1032461 17714 166 0.888889 1.47555574 Polyangia bacterium 3058050 Bacteria Bacteria 79 2.05e-15   NR MEO6954370.1 3058050 g17616 i0 76.1 0.831325301204819 46 11 83.1 0 3 140 411 456 MEO6954370.1 outer membrane protein transport protein [Polyangia bacterium] diamond 138 79 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
31109234 31109234 PRJNA1032461_S_NODE_19695_length_164_cov_0.904348_g19597_i0 PRJNA1032461 19695 164 0.904348 1.48313072 Myxococcota bacterium 2818507 Bacteria Bacteria 41.6 0.0334   NR MEM6925389.1 2818507 g19597 i0 42.3 0.951219512195122 52 25 86 1 17 157 436 487 MEM6925389.1 putative metal-binding motif-containing protein [Myxococcota bacterium] diamond 156 41.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32343279 32343279 PRJNA1032461_S_NODE_21079_length_162_cov_1.150442_g20981_i0 PRJNA1032461 21079 162 1.150442 1.86371604 Labilithrix sp. 1971228 Bacteria Bacteria 101 2.4099999999999994e-23   NR MDB4940636.1 1971228 g20981 i0 98.1 1 54 1 100 0 162 1 57 110 MDB4940636.1 polymerase sigma-54 factor RpoN [Labilithrix sp.] diamond 162 101 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;