RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA1032461" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1032461 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27224598 27224598 PRJNA1032461_S_NODE_9203_length_202_cov_0.869281_g9105_i0 PRJNA1032461 9203 202 0.869281 1.75594762 Myxine glutinosa 7769 Chordata Chordata 66.2 5.64e-11   NR XP_067986719.1 7769 g9105 i0 89.2 1.64851485148515 37 4 55 0 87 197 2 38 XP_067986719.1 uncharacterized protein [Myxine glutinosa] diamond 333 66.2 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
27509276 27509276 PRJNA1032461_S_NODE_1303_length_448_cov_2.781955_g1206_i0 PRJNA1032461 1303 448 2.781955 12.4631584 Erpetoichthys calabaricus 27687 Chordata Chordata 155 4.68e-43   NR XP_051791274.1 27687 g1206 i0 61.6 5.86607142857143 146 28 97.1 2 435 1 115 233 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2628 155 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
28835207 28835207 PRJNA1032461_S_NODE_19748_length_164_cov_0.860870_g19650_i0 PRJNA1032461 19748 164 0.86087 1.4118268 Ranitomeya imitator 111125 Chordata Chordata 65.1 1.65e-10   NR CAJ0966938.1 111125 g19650 i0 76.1 0.841463414634146 46 11 84.1 0 140 3 180 225 CAJ0966938.1 unnamed protein product [Ranitomeya imitator] diamond 138 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
28961747 28961747 PRJNA1032461_S_NODE_12268_length_179_cov_1.100000_g12170_i0 PRJNA1032461 12268 179 1.1 1.969 Xenopus laevis 8355 Chordata Chordata 70.5 2.62e-12   NR OCT93828.1 8355 g12170 i0 56.9 6.60335195530726 58 25 97.2 0 2 175 648 705 OCT93828.1 hypothetical protein XELAEV_18011499mg [Xenopus laevis] diamond 1182 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29214349 29214349 PRJNA1032461_S_NODE_2249_length_362_cov_1.156550_g2151_i0 PRJNA1032461 2249 362 1.15655 4.186711 Polypterus senegalus 55291 Chordata Chordata 64.7 2.52e-9   NR KAG2464211.1 55291 g2151 i0 81 1.39226519337017 42 7 34.8 1 237 362 212 252 KAG2464211.1 S22A3 protein, partial [Polypterus senegalus] diamond 504 64.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30185057 30185057 PRJNA1032461_S_NODE_12432_length_178_cov_1.155039_g12334_i0 PRJNA1032461 12432 178 1.155039 2.05596942 Chordata 7711 Chordata Chordata 90.9 1.73e-19   NR EMP38400.1 8469 g12334 i0 73.7 41.3089887640449 57 15 96.1 0 178 8 747 803 EMP38400.1 Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [Chelonia mydas] diamond 7353 91.7 0.991275899672846 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
30224642 30224642 PRJNA1032461_S_NODE_13132_length_174_cov_0.744000_g13034_i0 PRJNA1032461 13132 174 0.744 1.29456 Polypterus senegalus 55291 Chordata Chordata 63.5 6.22e-10   NR KAG2464211.1 55291 g13034 i0 87.9 0.568965517241379 33 4 56.9 0 2 100 246 278 KAG2464211.1 S22A3 protein, partial [Polypterus senegalus] diamond 99 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;