RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1032461" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 5 ✖

bioproject 1

  • PRJNA1032461 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27129508 27129508 PRJNA1032461_S_NODE_13462_length_172_cov_1.024390_g13364_i0 PRJNA1032461 13462 172 1.02439 1.7619508 ssRNA phage Esthiorhiza.4_1 2786089 Viruses Viruses 51.2 3.32e-6   NR YP_010769712.1 2786090 g13364 i0 60 0.697674418604651 40 16 69.8 0 171 52 90 129 YP_010769712.1 coat protein [ssRNA phage Esthiorhiza.4_10] diamond 120 51.2 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae Phobpsivirus Phobpsivirus agradaptatum
27698898 27698898 PRJNA1032461_S_NODE_2884_length_327_cov_1.762590_g2786_i0 PRJNA1032461 2884 327 1.76259 5.7636693 Leviviridae sp. 2027243 Viruses Viruses 117 9.06e-29   NR URG16378.1 2027243 g2786 i0 62.4 1.8348623853211 93 35 85.3 0 49 327 6 98 URG16378.1 MAG: RNA dependent RNA polymerase, partial [Leviviridae sp.] diamond 600 117 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae   Leviviridae sp.
30659065 30659065 PRJNA1032461_S_NODE_17833_length_165_cov_1.793103_g17735_i0 PRJNA1032461 17833 165 1.793103 2.95861995 Viruses 10239 Viruses Viruses 79.3 1.31e-15   NR URG16378.1 2027243 g17735 i0 59.3 5.89090909090909 54 22 98.2 0 1 162 279 332 URG16378.1 MAG: RNA dependent RNA polymerase, partial [Leviviridae sp.] diamond 972 79.3 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae   Leviviridae sp.
31868259 31868259 PRJNA1032461_S_NODE_10697_length_189_cov_1.664286_g10599_i0 PRJNA1032461 10697 189 1.664286 3.14550054 Leviviridae sp. 2027243 Viruses Viruses 79.7 1.39e-15   NR URG15777.1 2027243 g10599 i0 57.1 1.98412698412698 63 26 98.4 1 2 187 328 390 URG15777.1 MAG: RNA dependent RNA polymerase, partial [Leviviridae sp.] diamond 375 79.7 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae   Leviviridae sp.
32627324 32627324 PRJNA1032461_S_NODE_10440_length_191_cov_1.718310_g10342_i0 PRJNA1032461 10440 191 1.71831 3.2819721 Leviviridae sp. 2027243 Viruses Viruses 60.5 1.04e-8   NR UJQ85322.1 2027243 g10342 i0 74.3 2.18324607329843 35 9 55 0 111 7 210 244 UJQ85322.1 MAG: putative replicase protein [Leviviridae sp.] diamond 417 60.5 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae   Leviviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;