RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1031674" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1031674 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27319714 27319714 PRJNA1031674_P_NODE_3663_length_420_cov_1.547550_g3453_i0 PRJNA1031674 3663 420 1.54755 6.49971 Minisyncoccota bacterium 2053589 Bacteria Bacteria 92.8 1.36e-20   NR HMO78404.1 2053589 g3453 i0 38.8 1.85 129 77 90.7 1 397 17 48 176 HMO78404.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 777 92.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32784775 32784775 PRJNA1031674_P_NODE_10220_length_294_cov_3.307692_g10009_i0 PRJNA1031674 10220 294 3.307692 9.72461448 Minisyncoccota bacterium 2053589 Bacteria Bacteria 44.3 0.0158   NR HXK40022.1 2053589 g10009 i0 28.9 0.918367346938776 90 54 85.7 2 43 294 106 191 HXK40022.1 RNA polymerase subunit sigma-70 [Candidatus Paceibacterota bacterium] diamond 270 44.3 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;