RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1031674" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1031674 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12920362 12920362 PRJNA1031674_P_NODE_16331_length_272_cov_2.909548_g16120_i0 PRJNA1031674 16331 272 2.909548 7.91397056 Bacteria 2 Bacteria Bacteria 134 7.199999999999998e-35   NR MCB0827022.1 2033014 g16120 i0 85.9 8.94485294117647 71 10 78.3 0 215 3 2 72 MCB0827022.1 cysteine--tRNA ligase [Armatimonadota bacterium] diamond 2433 134 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29056371 29056371 PRJNA1031674_P_NODE_27748_length_241_cov_1.601190_g27537_i0 PRJNA1031674 27748 241 1.60119 3.8588679 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 112 1.05e-28   NR MBX3118531.1 2682144 g27537 i0 62.5 0.995850622406639 80 30 99.6 0 2 241 40 119 MBX3118531.1 DUF4157 domain-containing protein [Fimbriimonadaceae bacterium] diamond 240 112 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
29340513 29340513 PRJNA1031674_P_NODE_13329_length_282_cov_2.377990_g13118_i0 PRJNA1031674 13329 282 2.37799 6.7059318 Armatimonadota bacterium 2033014 Bacteria Bacteria 165 6.64e-48   NR MES1227395.1 2033014 g13118 i0 85.1 1 94 14 100 0 282 1 117 210 MES1227395.1 VWA domain-containing protein [Armatimonadota bacterium] diamond 282 165 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29719001 29719001 PRJNA1031674_P_NODE_10650_length_291_cov_2.114679_g10439_i0 PRJNA1031674 10650 291 2.114679 6.15371589 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 80.1 3.48e-15   NR MFN8220348.1 2682145 g10439 i0 52 0.77319587628866 75 36 77.3 0 5 229 310 384 MFN8220348.1 PDZ domain-containing protein [Fimbriimonadales bacterium] diamond 225 80.1 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
29877296 29877296 PRJNA1031674_P_NODE_16851_length_271_cov_1.318182_g16640_i0 PRJNA1031674 16851 271 1.318182 3.57227322 Armatimonadota bacterium 2033014 Bacteria Bacteria 62 8.68e-9   NR MBS1703248.1 2033014 g16640 i0 50.7 0.830258302583026 75 36 81.9 1 2 223 406 480 MBS1703248.1 M48 family metalloprotease [Armatimonadota bacterium] diamond 225 62 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32216514 32216514 PRJNA1031674_P_NODE_10978_length_290_cov_1.331797_g10767_i0 PRJNA1031674 10978 290 1.331797 3.8622113 Armatimonadota bacterium 2033014 Bacteria Bacteria 112 7.240000000000001e-27   NR MES1228183.1 2033014 g10767 i0 87.1 0.641379310344828 62 8 64.1 0 288 103 367 428 MES1228183.1 GAF domain-containing sensor histidine kinase [Armatimonadota bacterium] diamond 186 112 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;