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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA1025141" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1025141 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2279388 2279388 PRJNA1025141_P_NODE_9042_length_257_cov_1.114130_g8981_i0 PRJNA1025141 9042 257 1.11413 2.8633141 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 67.4 9.06e-11   NR KAE9553376.1 2598192 g8981 i0 39.3 0.980544747081712 84 37 84 2 3 218 457 538 KAE9553376.1 hypothetical protein FO519_003439 [Halicephalobus sp. NKZ332] diamond 252 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
12916495 12916495 PRJNA1025141_P_NODE_2031_length_577_cov_1.339286_g1971_i0 PRJNA1025141 2031 577 1.339286 7.72768022 Pristionchus pacificus 54126 Nematoda Nematoda 241 8.759999999999999e-72   NR KAF8357382.1 54126 g1971 i0 75.5 12.3119584055459 155 38 80.6 0 466 2 30 184 KAF8357382.1 aco-2 [Pristionchus pacificus] diamond 7104 241 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
13757534 13757534 PRJNA1025141_P_NODE_2291_length_539_cov_3.826180_g2230_i0 PRJNA1025141 2291 539 3.82618 20.6231102 Opisthokonta 33154 Nematoda Nematoda 215 5.949999999999999e-68   NR KFD50978.1 68888 g2230 i0 71.6 19.8701298701299 148 42 82.4 0 533 90 51 198 KFD50978.1 hypothetical protein M513_08161, partial [Trichuris suis] diamond 10710 215 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
16739721 16739721 PRJNA1025141_P_NODE_2754_length_493_cov_1.857143_g2693_i0 PRJNA1025141 2754 493 1.857143 9.15571499 Metazoa 33208 Nematoda Nematoda 143 6.079999999999999e-37   NR KAH7732279.1 70226 g2693 i0 58.3 3.05476673427992 120 43 68.8 1 374 36 26 145 KAH7732279.1 procollagen-proline dioxygenase beta subunit [Aphelenchoides avenae] diamond 1506 144 0.993055555555556 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
27919382 27919382 PRJNA1025141_P_NODE_10085_length_249_cov_0.875000_g10024_i0 PRJNA1025141 10085 249 0.875 2.17875 Pristionchus fissidentatus 1538716 Nematoda Nematoda 58.9 7.31e-8   NR GMT10917.1 1538716 g10024 i0 58.8 0.819277108433735 68 28 81.9 0 14 217 73 140 GMT10917.1 hypothetical protein PFISCL1PPCAC_2214, partial [Pristionchus fissidentatus] diamond 204 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
28140739 28140739 PRJNA1025141_P_NODE_505_length_1103_cov_22.432039_g473_i0 PRJNA1025141 505 1103 22.432039 247.42539016999999 Ditylenchus destructor 166010 Nematoda Nematoda 191 8.5e-54   NR KAI1709910.1 166010 g473 i0 37.4 0.908431550317316 334 166 88.4 12 81 1055 39 338 KAI1709910.1 papain family cysteine protease domain-containing protein [Ditylenchus destructor] diamond 1002 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
28582641 28582641 PRJNA1025141_P_NODE_9607_length_251_cov_0.865169_g9546_i0 PRJNA1025141 9607 251 0.865169 2.17157419 Steinernema carpocapsae 34508 Nematoda Nematoda 62.4 4.83e-9   NR TKR64459.1 34508 g9546 i0 37.3 1.92430278884462 83 52 99.2 0 3 251 138 220 TKR64459.1 hypothetical protein L596_024986 [Steinernema carpocapsae] diamond 483 62.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
28771900 28771900 PRJNA1025141_P_NODE_10747_length_247_cov_1.563218_g10686_i0 PRJNA1025141 10747 247 1.563218 3.86114846 Caenorhabditis elegans 6239 Nematoda Nematoda 105 4.38e-24   NR NP_001366774.1 6239 g10686 i0 59.3 4.91902834008097 81 33 98.4 0 245 3 599 679 NP_001366774.1 Isoleucine--tRNA ligase, cytoplasmic [Caenorhabditis elegans] diamond 1215 105 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
29561165 29561165 PRJNA1025141_P_NODE_12390_length_243_cov_0.905882_g12329_i0 PRJNA1025141 12390 243 0.905882 2.20129326 Anisakis simplex 6269 Nematoda Nematoda 44.7 0.00767   NR VDK55644.1 6269 g12329 i0 32.4 0.876543209876543 71 47 86.4 1 14 223 552 622 VDK55644.1 unnamed protein product [Anisakis simplex] diamond 213 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
29687274 29687274 PRJNA1025141_P_NODE_5290_length_350_cov_2.184116_g5229_i0 PRJNA1025141 5290 350 2.184116 7.644406 Meloidogyne graminicola 189291 Nematoda Nematoda 115 5.15e-28   NR KAF7639490.1 189291 g5229 i0 53.2 5.18571428571429 94 44 80.6 0 68 349 249 342 KAF7639490.1 hypothetical protein Mgra_00001167 [Meloidogyne graminicola] diamond 1815 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31203586 31203586 PRJNA1025141_P_NODE_5295_length_350_cov_1.487365_g5234_i0 PRJNA1025141 5295 350 1.487365 5.2057775 Pristionchus fissidentatus 1538716 Nematoda Nematoda 52.4 4.78e-5   NR GMT10917.1 1538716 g5234 i0 36.6 0.96 112 70 95.1 1 344 12 198 309 GMT10917.1 hypothetical protein PFISCL1PPCAC_2214, partial [Pristionchus fissidentatus] diamond 336 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
31773279 31773279 PRJNA1025141_P_NODE_1617_length_654_cov_1.130809_g1558_i0 PRJNA1025141 1617 654 1.130809 7.39549086 Oigolaimella attenuata 669116 Nematoda Nematoda 63.9 7.17e-10   NR ACV20956.1 669116 g1558 i0 70.7 1.31651376146789 41 12 18.8 0 653 531 19 59 ACV20956.1 large subunit ribosomal protein 29 [Oigolaimella attenuata] diamond 861 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella attenuata
32658503 32658503 PRJNA1025141_P_NODE_8980_length_258_cov_1.232432_g8919_i0 PRJNA1025141 8980 258 1.232432 3.17967456 Trichuris suis 68888 Nematoda Nematoda 104 1.0099999999999999e-23   NR KFD72333.1 68888 g8919 i0 59.5 2.93023255813953 84 34 97.7 0 1 252 290 373 KFD72333.1 hypothetical protein M514_11620 [Trichuris suis] diamond 756 104 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;