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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA1025141" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 8 ✖

bioproject 1

  • PRJNA1025141 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3989343 3989343 PRJNA1025141_P_NODE_2624_length_506_cov_1.551963_g2563_i0 PRJNA1025141 2624 506 1.551963 7.85293278 Methanobacteriota archaeon 2026739 Archaea Archaea 147 1.24e-40   NR RYE97637.1 2026739 g2563 i0 70.5 0.66403162055336 112 31 65.2 1 177 506 20 131 RYE97637.1 MAG: C1 family peptidase, partial [Methanobacteriota archaeon] diamond 336 147 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
18855790 18855790 PRJNA1025141_P_NODE_415_length_1169_cov_4.146898_g388_i0 PRJNA1025141 415 1169 4.146898 48.47723762 Methanosarcinales archaeon 2250255 Archaea Archaea 607 8.879999999999997e-216   NR RYE83110.1 2250255 g388 i0 79.5 0.962360992301112 375 77 96.2 0 2 1126 42 416 RYE83110.1 MAG: translation elongation factor EF-1 subunit alpha, partial [Methanosarcinales archaeon] diamond 1125 607 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
24388862 24388862 PRJNA1025141_P_NODE_3580_length_431_cov_1.402235_g3519_i0 PRJNA1025141 3580 431 1.402235 6.04363285 Methanosarcinales archaeon 2250255 Archaea Archaea 227 6.32e-73   NR RYE84306.1 2250255 g3519 i0 79.4 0.946635730858469 136 28 94.7 0 2 409 88 223 RYE84306.1 MAG: 50S ribosomal protein L3 [Methanosarcinales archaeon] diamond 408 227 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
26813527 26813527 PRJNA1025141_P_NODE_921_length_855_cov_1.439898_g873_i0 PRJNA1025141 921 855 1.439898 12.3111279 Methanosphaera sp. 2666342 Archaea Archaea 116 3.86e-25   NR MEE3419037.1 2666342 g873 i0 35.2 0.757894736842105 216 130 74.4 4 173 808 874 1083 MEE3419037.1 hypothetical protein [Methanosphaera sp.] diamond 648 116 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
27635437 27635437 PRJNA1025141_P_NODE_6044_length_326_cov_0.735178_g5983_i0 PRJNA1025141 6044 326 0.735178 2.39668028 Methanobacteriota archaeon 2026739 Archaea Archaea 96.7 1.23e-22   NR RYE99645.1 2026739 g5983 i0 54.8 0.957055214723926 104 34 90.2 2 326 33 61 157 RYE99645.1 MAG: hypothetical protein EOO41_00780 [Methanobacteriota archaeon] diamond 312 96.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27730345 27730345 PRJNA1025141_P_NODE_8664_length_264_cov_1.408377_g8603_i0 PRJNA1025141 8664 264 1.408377 3.71811528 Methanobacteriota archaeon 2026739 Archaea Archaea 89 2.33e-19   NR RYE97637.1 2026739 g8603 i0 60 0.795454545454545 70 27 78.4 1 209 3 20 89 RYE97637.1 MAG: C1 family peptidase, partial [Methanobacteriota archaeon] diamond 210 89 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27919384 27919384 PRJNA1025141_P_NODE_11085_length_246_cov_1.335260_g11024_i0 PRJNA1025141 11085 246 1.33526 3.2847396 Halorubrum sp. BV1 1498500 Archaea Archaea 43.1 0.0277   NR WP_049984514.1 1498500 g11024 i0 35.4 0.792682926829268 65 35 70.7 2 17 190 136 200 WP_049984514.1 PAS domain-containing protein [Halorubrum sp. BV1] diamond 195 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. BV1
28290327 28290327 PRJNA1025141_P_NODE_3706_length_422_cov_2.071633_g3645_i0 PRJNA1025141 3706 422 2.071633 8.74229126 root 1 Root_unresolved Root_unresolved 80.1 2.13e-14   NR MBO7518105.1 66852 g3645 i0 69.4 1.84123222748815 49 14 34.1 1 323 180 423 471 MBO7518105.1 hypothetical protein [Methanobrevibacter sp.] diamond 777 80.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;