RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1022587" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022587 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27698775 27698775 PRJNA1022587_S_NODE_1144_length_262_cov_0.846561_g1142_i0 PRJNA1022587 1144 262 0.846561 2.21798982 Snodgrassella sp. 2815304 Bacteria Bacteria 91.3 2.58e-20   NR MCO6517203.1 2815304 g1142 i0 52.4 0.961832061068702 84 39 95 1 259 11 93 176 MCO6517203.1 hypothetical protein [Snodgrassella sp.] diamond 252 91.3 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella sp.
32343144 32343144 PRJNA1022587_S_NODE_799_length_295_cov_3.824324_g797_i0 PRJNA1022587 799 295 3.824324 11.281755799999999 Salmonella enterica 28901 Bacteria Bacteria 174 8.779999999999999e-55   NR WP_254486001.1 28901 g797 i0 96.5 7.84067796610169 85 3 86.4 0 256 2 1 85 WP_254486001.1 transposase family protein, partial [Salmonella enterica] diamond 2313 174 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;