RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1022587" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 2 ✖

bioproject 1

  • PRJNA1022587 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30659024 30659024 PRJNA1022587_S_NODE_1393_length_247_cov_0.827586_g1391_i0 PRJNA1022587 1393 247 0.827586 2.04413742 Asteraceae 4210 Plants Plants 53.1 8.63e-6   NR PWA69540.1 35608 g1391 i0 95.5 0.801619433198381 22 1 26.7 0 148 213 334 355 PWA69540.1 Stress up-regulated Nod 19 [Artemisia annua] diamond 198 53.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Artemisia Artemisia annua
31678346 31678346 PRJNA1022587_S_NODE_1337_length_249_cov_0.812500_g1335_i0 PRJNA1022587 1337 249 0.8125 2.023125 Artemisia annua 35608 Plants Plants 104 6.269999999999999e-24   NR PWA85024.1 35608 g1335 i0 94 0.602409638554217 50 3 60.2 0 99 248 1035 1084 PWA85024.1 Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic [Artemisia annua] diamond 150 104 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Artemisia Artemisia annua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;