RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1022139" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1022139 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28361339 28361339 PRJNA1022139_P_NODE_39906_length_244_cov_2.701754_g39801_i0 PRJNA1022139 39906 244 2.701754 6.59227976 Amoeba proteus 5775 Tubulinea other_Eukaryota 71.6 2.34e-12   NR AAD37351.1 5775 g39801 i0 49.4 0.971311475409836 79 38 97.1 1 1 237 114 190 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 237 71.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32595901 32595901 PRJNA1022139_P_NODE_16240_length_342_cov_1.330855_g16135_i0 PRJNA1022139 16240 342 1.330855 4.5515241 Amoeba proteus 5775 Tubulinea other_Eukaryota 50.4 1.92e-4   NR AKN09692.1 5775 g16135 i0 33.3 0.684210526315789 78 50 68.4 2 22 255 3 78 AKN09692.1 Tom40 [Amoeba proteus] diamond 234 50.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32879162 32879162 PRJNA1022139_P_NODE_9500_length_431_cov_1.488827_g9395_i0 PRJNA1022139 9500 431 1.488827 6.41684437 Amoeba proteus 5775 Tubulinea other_Eukaryota 89 3.6e-18   NR AKN09692.1 5775 g9395 i0 39.2 0.835266821345708 120 72 83.5 1 418 59 165 283 AKN09692.1 Tom40 [Amoeba proteus] diamond 360 89 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;