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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1022139" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 9 ✖

bioproject 1

  • PRJNA1022139 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23113958 23113958 PRJNA1022139_P_NODE_31419_length_261_cov_1.914894_g31314_i0 PRJNA1022139 31419 261 1.914894 4.99787334 FCB group 1783270 Bacteria Bacteria 131 2.58e-33   NR WP_293913574.1 47478 g31314 i0 74.4 13.7701149425287 86 22 98.9 0 3 260 683 768 WP_293913574.1 aminomethyl-transferring glycine dehydrogenase [Deinococcus sp.] diamond 3594 132 0.992424242424242 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
23955899 23955899 PRJNA1022139_P_NODE_2659_length_760_cov_4.250364_g2569_i0 PRJNA1022139 2659 760 4.250364 32.3027664 root 1 Root_unresolved Root_unresolved 296 7.74e-98   NR WP_303102018.1 47478 g2569 i0 64.5 37.7723684210526 245 86 96.3 1 5 736 8 252 WP_303102018.1 3-hydroxyacyl-CoA dehydrogenase [Deinococcus sp.] diamond 28707 296 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
27161096 27161096 PRJNA1022139_P_NODE_41162_length_243_cov_0.905882_g41057_i0 PRJNA1022139 41162 243 0.905882 2.20129326 Deinococcota bacterium 1913990 Bacteria Bacteria 131 5.95e-37   NR MDQ3459620.1 1913990 g41057 i0 75.9 0.975308641975309 79 19 97.5 0 240 4 13 91 MDQ3459620.1 HIT family protein [Deinococcota bacterium] diamond 237 131 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium
27446067 27446067 PRJNA1022139_P_NODE_36083_length_249_cov_0.875000_g35978_i0 PRJNA1022139 36083 249 0.875 2.17875 Deinococcus sp. JMULE3 2518341 Bacteria Bacteria 42.7 0.0225   NR WP_174367002.1 2518341 g35978 i0 50 0.578313253012048 48 23 57.8 1 32 175 103 149 WP_174367002.1 hypothetical protein [Deinococcus sp. JMULE3] diamond 144 42.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JMULE3
28171947 28171947 PRJNA1022139_P_NODE_31166_length_262_cov_1.888889_g31061_i0 PRJNA1022139 31166 262 1.888889 4.94888918 Deinococcus aerophilus 522488 Bacteria Bacteria 42.7 0.0468   NR WP_188904705.1 522488 g31061 i0 34.9 0.984732824427481 86 56 98.5 0 1 258 65 150 WP_188904705.1 murein hydrolase activator EnvC family protein [Deinococcus aerophilus] diamond 258 42.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aerophilus
29332413 29332413 PRJNA1022139_P_NODE_39169_length_245_cov_1.790698_g39064_i0 PRJNA1022139 39169 245 1.790698 4.3872101 root 1 Root_unresolved Root_unresolved 161 4.98e-44   NR 1TAQ_A 271 g39064 i0 100 4.95918367346939 81 0 99.2 0 245 3 409 489 1TAQ_A Chain A, TAQ DNA POLYMERASE [Thermus aquaticus] diamond 1215 161 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
30288081 30288081 PRJNA1022139_P_NODE_18552_length_323_cov_1.236000_g18447_i0 PRJNA1022139 18552 323 1.236 3.99228 Deinococcus peraridilitoris 432329 Bacteria Bacteria 78.6 2.01e-15   NR WP_041232012.1 432329 g18447 i0 39.5 1.05882352941176 114 58 97.5 4 321 7 20 131 WP_041232012.1 SMI1/KNR4 family protein [Deinococcus peraridilitoris] diamond 342 78.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris
30627285 30627285 PRJNA1022139_P_NODE_29233_length_270_cov_0.908629_g29128_i0 PRJNA1022139 29233 270 0.908629 2.4532983 Deinococcus 1298 Bacteria Bacteria 78.2 1.83e-14   NR WP_189071607.1 1867090 g29128 i0 42.7 4.91111111111111 89 51 98.9 0 1 267 208 296 WP_189071607.1 BTAD domain-containing putative transcriptional regulator [Deinococcus sedimenti] diamond 1326 78.6 0.994910941475827 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sedimenti
31362298 31362298 PRJNA1022139_P_NODE_24736_length_285_cov_3.792453_g24631_i0 PRJNA1022139 24736 285 3.792453 10.80849105 Aminobacterium mobile 81467 Bacteria Bacteria 44.7 0.0124   NR WP_024822765.1 81467 g24631 i0 47.8 0.484210526315789 46 23 48.4 1 6 143 450 494 WP_024822765.1 DUF4139 domain-containing protein [Aminobacterium mobile] diamond 138 44.7 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium mobile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;