RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA1020854" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1020854 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18855018 18855018 PRJNA1020854_S_NODE_30775_length_185_cov_1980.756410_g28011_i0 PRJNA1020854 30775 185 1980.75641 3664.3993585 Terrimicrobium sp. 1965319 Bacteria Bacteria 82.8 1.3e-16   NR MET0224303.1 1965319 g28011 i0 64.4 0.956756756756757 59 18 90.8 1 169 2 252 310 MET0224303.1 DUF4157 domain-containing protein [Terrimicrobium sp.] diamond 177 82.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sp.
19286661 19286661 PRJNA1020854_S_NODE_28656_length_194_cov_4.624242_g25892_i0 PRJNA1020854 28656 194 4.624242 8.97102948 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 101 4.789999999999999e-23   NR HUI06118.1 2499141 g25892 i0 74.2 1.85567010309278 62 16 95.9 0 187 2 400 461 HUI06118.1 family 78 glycoside hydrolase catalytic domain [Verrucomicrobiia bacterium] diamond 360 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
24387062 24387062 PRJNA1020854_S_NODE_28100_length_197_cov_2.630952_g25336_i0 PRJNA1020854 28100 197 2.630952 5.18297544 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 88.2 1.97e-18   NR HWY77382.1 2499141 g25336 i0 64.6 0.989847715736041 65 23 99 0 1 195 512 576 HWY77382.1 response regulator [Verrucomicrobiia bacterium] diamond 195 88.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27382673 27382673 PRJNA1020854_S_NODE_42283_length_152_cov_4.528455_g39519_i0 PRJNA1020854 42283 152 4.528455 6.8832516 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 92 4.57e-20   NR HTS17928.1 2499141 g39519 i0 76 3.94736842105263 50 12 98.7 0 152 3 445 494 HTS17928.1 family 78 glycoside hydrolase catalytic domain [Verrucomicrobiia bacterium] diamond 600 92 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28582531 28582531 PRJNA1020854_S_NODE_33407_length_176_cov_3.598639_g30643_i0 PRJNA1020854 33407 176 3.598639 6.33360464 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 70.1 1.74e-12   NR MFO1478276.1 2026799 g30643 i0 58.2 1.92613636363636 55 23 93.8 0 167 3 156 210 MFO1478276.1 aminotransferase class IV [Verrucomicrobiota bacterium] diamond 339 70.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28803148 28803148 PRJNA1020854_S_NODE_29168_length_192_cov_3.368098_g26404_i0 PRJNA1020854 29168 192 3.368098 6.46674816 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.9 1.9e-13   NR MBS0634256.1 2026799 g26404 i0 49.3 1.046875 67 31 100 2 1 192 106 172 MBS0634256.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 201 73.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28953732 28953732 PRJNA1020854_S_NODE_34948_length_171_cov_3.394366_g32184_i0 PRJNA1020854 34948 171 3.394366 5.80436586 Bacteria 2 Bacteria Bacteria 88.2 1.41e-18   NR MFM9954827.1 2006848 g32184 i0 96.4 1.92982456140351 55 2 96.5 0 4 168 575 629 MFM9954827.1 putative Ig domain-containing protein [Opitutaceae bacterium] diamond 330 88.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30224392 30224392 PRJNA1020854_S_NODE_29692_length_190_cov_2.521739_g26928_i0 PRJNA1020854 29692 190 2.521739 4.7913041 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 97.8 7.47e-22   NR MEN9632757.1 2026799 g26928 i0 94.4 0.852631578947368 54 3 85.3 0 28 189 504 557 MEN9632757.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 162 97.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30288041 30288041 PRJNA1020854_S_NODE_18312_length_262_cov_4.064378_g15548_i0 PRJNA1020854 18312 262 4.064378 10.64867036 Terrimicrobium sp. 1965319 Bacteria Bacteria 100 1.65e-22   NR MET0224303.1 1965319 g15548 i0 59.6 1.01908396946565 89 34 99.6 1 262 2 363 451 MET0224303.1 DUF4157 domain-containing protein [Terrimicrobium sp.] diamond 267 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sp.
30856348 30856348 PRJNA1020854_S_NODE_40554_length_156_cov_3.086614_g37790_i0 PRJNA1020854 40554 156 3.086614 4.81511784 Candidatus Methylacidiphilales bacterium 2720631 Bacteria Bacteria 63.9 3.87e-10   NR HEX4141034.1 2720631 g37790 i0 56.1 1.55769230769231 41 18 78.8 0 156 34 488 528 HEX4141034.1 glycosyltransferase family 39 protein [Candidatus Methylacidiphilales bacterium] diamond 243 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales     Candidatus Methylacidiphilales bacterium
31077696 31077696 PRJNA1020854_S_NODE_28915_length_193_cov_3.707317_g26151_i0 PRJNA1020854 28915 193 3.707317 7.15512181 Opitutia bacterium Tous-C4FEB 1982321 Bacteria Bacteria 75.9 3.93e-14   NR PAW86723.1 1982321 g26151 i0 94.9 0.606217616580311 39 1 59.1 1 16 129 435 473 PAW86723.1 MAG: hypothetical protein B9S26_15375 [Opitutia bacterium Tous-C4FEB] diamond 117 75.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium Tous-C4FEB
31108988 31108988 PRJNA1020854_S_NODE_37815_length_163_cov_2.686567_g35051_i0 PRJNA1020854 37815 163 2.686567 4.37910421 Opitutaceae bacterium 2006848 Bacteria Bacteria 98.6 2.5e-24   NR NBR59932.1 2006848 g35051 i0 86.5 0.957055214723926 52 7 95.7 0 3 158 49 100 NBR59932.1 hypothetical protein [Opitutaceae bacterium] diamond 156 98.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31583686 31583686 PRJNA1020854_S_NODE_28736_length_194_cov_2.775758_g25972_i0 PRJNA1020854 28736 194 2.775758 5.38497052 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52.4 1.62e-6   NR NBV87385.1 2026799 g25972 i0 38.1 1.94845360824742 63 39 97.4 0 192 4 52 114 NBV87385.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 378 52.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;