RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1020854" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1020854 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29623819 29623819 PRJNA1020854_S_NODE_10050_length_412_cov_18.268930_g7315_i0 PRJNA1020854 10050 412 18.26893 75.2679916 Rhodothermales bacterium 2306054 Bacteria Bacteria 78.2 9.99e-14   NR HLA63603.1 2306054 g7315 i0 35.1 3.56796116504854 131 75 88.1 3 47 409 110 240 HLA63603.1 PhoH family protein [Rhodothermales bacterium] diamond 1470 78.2 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
30824737 30824737 PRJNA1020854_S_NODE_18734_length_258_cov_2.912664_g15970_i0 PRJNA1020854 18734 258 2.912664 7.51467312 Salinibacter ruber 146919 Bacteria Bacteria 53.9 5.51e-6   NR WP_259124349.1 146919 g15970 i0 55 1.38372093023256 40 17 46.5 1 159 40 850 888 WP_259124349.1 PKD domain-containing protein [Salinibacter ruber] diamond 357 53.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;