RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1020641" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1020641 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28551001 28551001 PRJNA1020641_P_NODE_4267_length_294_cov_0.904977_g4224_i0 PRJNA1020641 4267 294 0.904977 2.66063238 Acropora millepora 45264 Cnidaria other_Eukaryota 48.5 6.02e-4   NR XP_044171043.1 45264 g4224 i0 51.4 0.714285714285714 35 17 35.7 0 120 16 185 219 XP_044171043.1 uncharacterized protein LOC122955325 [Acropora millepora] diamond 210 48.5 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora millepora
30224379 30224379 PRJNA1020641_P_NODE_3852_length_311_cov_0.970588_g3809_i0 PRJNA1020641 3852 311 0.970588 3.01852868 Acropora millepora 45264 Cnidaria other_Eukaryota 86.3 3.74e-17   NR XP_029194785.1 45264 g3809 i0 48.8 2.52733118971061 80 38 77.2 2 51 290 193 269 XP_029194785.1 LOW QUALITY PROTEIN: intraflagellar transport protein 52 homolog [Acropora millepora] diamond 786 86.3 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora millepora
32057961 32057961 PRJNA1020641_P_NODE_6758_length_245_cov_0.895349_g6715_i0 PRJNA1020641 6758 245 0.895349 2.19360505 Dendronephthya gigantea 151771 Cnidaria other_Eukaryota 42.7 0.0384   NR XP_028398983.1 151771 g6715 i0 38 0.612244897959184 50 31 61.2 0 227 78 175 224 XP_028398983.1 uncharacterized protein LOC114522489 isoform X2 [Dendronephthya gigantea] diamond 150 42.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Nephtheidae Dendronephthya Dendronephthya gigantea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;